BiocPy#

Installs all BiocPy packages. The package itself does not provide any functionality on its own. It provides an

  • easier way to install all core packages

  • an interface to access the base data representations or classes

Install#

Package is published to PyPI

pip install biocpy

Usage#

To import any of the data classes,

from biocpy.genomicranges import GenomicRanges
from biocpy.summarizedexperiment import SummarizedExperiment
from biocpy.singlecellexperiment import SingleCellExperiment 
from biocpy.multiassayexperiment import MultiAssayExperiment

gr = GenomicRange(...)
se = SummarizedExperiment(...)
sce = SingleCellExperiment(...)
mae = MultiAssayExperiment(...)

For more use cases, checkout the documentation.

Note#

This project has been set up using PyScaffold 4.1.1. For details and usage information on PyScaffold see https://pyscaffold.org/.