GenomicRanges¶
Python equivalent to Bioconductor’s GenomicRanges to represent genomic locations and support genomic analysis. It uses efficient structures already available in the Pandas/NumPy eco-system.
Install¶
Package is deployed to PyPI
pip install genomicranges
Contents¶
- Overview
GenomicRanges
: Genomic analysis- Construct a
GenomicRanges
object - Sequence information
- Subset operations
- Intra-range transformations
- Inter-range methods
- Set operations
- Compute over bins
- Generate tiles or bins
- Coverage
- Overlap based methods
- Search operations
- Comparison, rank and order operations
- Combine
GenomicRanges
objects by rows - Misc operations
GenomicRangesList
class- Module Reference
- Contributions & Help
- License
- Authors
- Changelog
- Version 0.6.2 - 0.6.3
- Version 0.6.0 - 0.6.1
- Version 0.5.2
- Version 0.5.1
- Version 0.5.0
- Version 0.4.32 - 0.4.33
- Version 0.4.27 - 0.4.31
- Version 0.4.26
- Version 0.4.25
- Version 0.4.21 - 0.4.24
- Version 0.4.20
- Version 0.4.19
- Version 0.4.17
- Version 0.4.9 - 0.4.16
- Version 0.4.0 to 0.4.8
- Version 0.3.0
- Version 0.2
- Version 0.1