Changelog¶
Version 0.2.10 - 0.2.12¶
Added a numpy vectorized version of finding gaps (tldr: not fast compared to the traditional version). May be needs a better implementation
Added NCLS based intersection operation (based on what pyranges does in their internals)
Added tests for intersection operations.
Fixed and issue when coercing
IRanges
containing mcols.
Version 0.2.8 - 0.2.9¶
Optimizing a couple of methods in IRanges
:
Update
gaps
andreduce
to slightly faster NumPy based operations.Switch
np.array
tonp.asarray
Version 0.2.7¶
Changes to be compatible with NumPy’s 2.0 release:
If using
np.array(obj, copy=False)
replace it withnp.asarray(obj)
to allow a copy when needed (no behavior change in NumPy 1.x). For more details, see https://numpy.org/devdocs/numpy_2_0_migration_guide.html#adapting-to-changes-in-the-copy-keyword.
Version 0.2.4¶
Support coercion from
IRanges
to Polars and vice-versaSetting up
myst_nb
to execute snippets in tutorial/documentation markdown files
Version 0.2.3¶
Feature complete implementation of IRanges from Bioconductor