spatialexperiment

• spatialexperiment package
  • Subpackages
    • spatialexperiment.io package
      • Submodules
      • spatialexperiment.io.tenx_visium module
      • Module contents
  • Submodules
  • spatialexperiment.spatialexperiment module
    • SpatialExperiment
      • SpatialExperiment.__copy__()
      • SpatialExperiment.__deepcopy__()
      • SpatialExperiment.__init__()
      • SpatialExperiment.__repr__()
      • SpatialExperiment.add_img()
      • SpatialExperiment.combine_columns()
      • SpatialExperiment.copy()
      • SpatialExperiment.get_image_data()
      • SpatialExperiment.get_img()
      • SpatialExperiment.get_img_data()
      • SpatialExperiment.get_scale_factors()
      • SpatialExperiment.get_slice()
      • SpatialExperiment.get_spatial_coordinates()
      • SpatialExperiment.get_spatial_coordinates_names()
      • SpatialExperiment.get_spatial_coords()
      • SpatialExperiment.get_spatial_coords_names()
      • SpatialExperiment.image_data
      • SpatialExperiment.img_data
      • SpatialExperiment.img_raster()
      • SpatialExperiment.img_source()
      • SpatialExperiment.mirror_img()
      • SpatialExperiment.relaxed_combine_columns()
      • SpatialExperiment.remove_img()
      • SpatialExperiment.rotate_img()
      • SpatialExperiment.set_column_data()
      • SpatialExperiment.set_image_data()
      • SpatialExperiment.set_img_data()
      • SpatialExperiment.set_spatial_coordinates()
      • SpatialExperiment.set_spatial_coordinates_names()
      • SpatialExperiment.set_spatial_coords()
      • SpatialExperiment.set_spatial_coords_names()
      • SpatialExperiment.spatial_coordinates
      • SpatialExperiment.spatial_coordinates_names
      • SpatialExperiment.spatial_coords
      • SpatialExperiment.spatial_coords_names
      • SpatialExperiment.to_anndata()
      • SpatialExperiment.to_spatial_experiment()
    • combine_columns()
    • relaxed_combine_columns()
  • spatialexperiment.spatialimage module
    • LoadedSpatialImage
      • LoadedSpatialImage.__abstractmethods__
      • LoadedSpatialImage.__copy__()
      • LoadedSpatialImage.__deepcopy__()
      • LoadedSpatialImage.__eq__()
      • LoadedSpatialImage.__hash__()
      • LoadedSpatialImage.__init__()
      • LoadedSpatialImage.__repr__()
      • LoadedSpatialImage.copy()
      • LoadedSpatialImage.get_image()
      • LoadedSpatialImage.image
      • LoadedSpatialImage.img_raster()
      • LoadedSpatialImage.img_source()
      • LoadedSpatialImage.set_image()
    • RemoteSpatialImage
      • RemoteSpatialImage.__abstractmethods__
      • RemoteSpatialImage.__annotations__
      • RemoteSpatialImage.__copy__()
      • RemoteSpatialImage.__deepcopy__()
      • RemoteSpatialImage.__eq__()
      • RemoteSpatialImage.__hash__()
      • RemoteSpatialImage.__init__()
      • RemoteSpatialImage.__repr__()
      • RemoteSpatialImage.copy()
      • RemoteSpatialImage.get_url()
      • RemoteSpatialImage.img_raster()
      • RemoteSpatialImage.img_source()
      • RemoteSpatialImage.set_url()
      • RemoteSpatialImage.url
    • StoredSpatialImage
      • StoredSpatialImage.__abstractmethods__
      • StoredSpatialImage.__annotations__
      • StoredSpatialImage.__copy__()
      • StoredSpatialImage.__deepcopy__()
      • StoredSpatialImage.__eq__()
      • StoredSpatialImage.__hash__()
      • StoredSpatialImage.__init__()
      • StoredSpatialImage.__repr__()
      • StoredSpatialImage.copy()
      • StoredSpatialImage.get_path()
      • StoredSpatialImage.img_raster()
      • StoredSpatialImage.img_source()
      • StoredSpatialImage.path
      • StoredSpatialImage.set_path()
    • VirtualSpatialImage
      • VirtualSpatialImage.__abstractmethods__
      • VirtualSpatialImage.__annotations__
      • VirtualSpatialImage.__eq__()
      • VirtualSpatialImage.__hash__()
      • VirtualSpatialImage.__init__()
      • VirtualSpatialImage.affine()
      • VirtualSpatialImage.dimensions
      • VirtualSpatialImage.get_dimensions()
      • VirtualSpatialImage.get_metadata()
      • VirtualSpatialImage.img_raster()
      • VirtualSpatialImage.img_source()
      • VirtualSpatialImage.metadata
      • VirtualSpatialImage.mirror_img()
      • VirtualSpatialImage.rotate_img()
      • VirtualSpatialImage.set_metadata()
      • VirtualSpatialImage.to_numpy()
    • construct_spatial_image_class()
  • Module contents
    • LoadedSpatialImage
      • LoadedSpatialImage.__abstractmethods__
      • LoadedSpatialImage.__annotations__
      • LoadedSpatialImage.__copy__()
      • LoadedSpatialImage.__deepcopy__()
      • LoadedSpatialImage.__eq__()
      • LoadedSpatialImage.__hash__()
      • LoadedSpatialImage.__init__()
      • LoadedSpatialImage.__repr__()
      • LoadedSpatialImage.copy()
      • LoadedSpatialImage.get_image()
      • LoadedSpatialImage.image
      • LoadedSpatialImage.img_raster()
      • LoadedSpatialImage.img_source()
      • LoadedSpatialImage.set_image()
    • RemoteSpatialImage
      • RemoteSpatialImage.__abstractmethods__
      • RemoteSpatialImage.__annotations__
      • RemoteSpatialImage.__copy__()
      • RemoteSpatialImage.__deepcopy__()
      • RemoteSpatialImage.__eq__()
      • RemoteSpatialImage.__hash__()
      • RemoteSpatialImage.__init__()
      • RemoteSpatialImage.__repr__()
      • RemoteSpatialImage.copy()
      • RemoteSpatialImage.get_url()
      • RemoteSpatialImage.img_raster()
      • RemoteSpatialImage.img_source()
      • RemoteSpatialImage.set_url()
      • RemoteSpatialImage.url
    • SpatialExperiment
      • SpatialExperiment.__annotations__
      • SpatialExperiment.__copy__()
      • SpatialExperiment.__deepcopy__()
      • SpatialExperiment.__init__()
      • SpatialExperiment.__repr__()
      • SpatialExperiment.add_img()
      • SpatialExperiment.combine_columns()
      • SpatialExperiment.copy()
      • SpatialExperiment.get_image_data()
      • SpatialExperiment.get_img()
      • SpatialExperiment.get_img_data()
      • SpatialExperiment.get_scale_factors()
      • SpatialExperiment.get_slice()
      • SpatialExperiment.get_spatial_coordinates()
      • SpatialExperiment.get_spatial_coordinates_names()
      • SpatialExperiment.get_spatial_coords()
      • SpatialExperiment.get_spatial_coords_names()
      • SpatialExperiment.image_data
      • SpatialExperiment.img_data
      • SpatialExperiment.img_raster()
      • SpatialExperiment.img_source()
      • SpatialExperiment.mirror_img()
      • SpatialExperiment.relaxed_combine_columns()
      • SpatialExperiment.remove_img()
      • SpatialExperiment.rotate_img()
      • SpatialExperiment.set_column_data()
      • SpatialExperiment.set_image_data()
      • SpatialExperiment.set_img_data()
      • SpatialExperiment.set_spatial_coordinates()
      • SpatialExperiment.set_spatial_coordinates_names()
      • SpatialExperiment.set_spatial_coords()
      • SpatialExperiment.set_spatial_coords_names()
      • SpatialExperiment.spatial_coordinates
      • SpatialExperiment.spatial_coordinates_names
      • SpatialExperiment.spatial_coords
      • SpatialExperiment.spatial_coords_names
      • SpatialExperiment.to_anndata()
      • SpatialExperiment.to_spatial_experiment()
    • StoredSpatialImage
      • StoredSpatialImage.__abstractmethods__
      • StoredSpatialImage.__annotations__
      • StoredSpatialImage.__copy__()
      • StoredSpatialImage.__deepcopy__()
      • StoredSpatialImage.__eq__()
      • StoredSpatialImage.__hash__()
      • StoredSpatialImage.__init__()
      • StoredSpatialImage.__repr__()
      • StoredSpatialImage.copy()
      • StoredSpatialImage.get_path()
      • StoredSpatialImage.img_raster()
      • StoredSpatialImage.img_source()
      • StoredSpatialImage.path
      • StoredSpatialImage.set_path()
    • VirtualSpatialImage
      • VirtualSpatialImage.__abstractmethods__
      • VirtualSpatialImage.__annotations__
      • VirtualSpatialImage.__eq__()
      • VirtualSpatialImage.__hash__()
      • VirtualSpatialImage.__init__()
      • VirtualSpatialImage.affine()
      • VirtualSpatialImage.dimensions
      • VirtualSpatialImage.get_dimensions()
      • VirtualSpatialImage.get_metadata()
      • VirtualSpatialImage.img_raster()
      • VirtualSpatialImage.img_source()
      • VirtualSpatialImage.metadata
      • VirtualSpatialImage.mirror_img()
      • VirtualSpatialImage.rotate_img()
      • VirtualSpatialImage.set_metadata()
      • VirtualSpatialImage.to_numpy()
    • construct_spatial_image_class()
    • read_tenx_visium()