SummarizedExperiment¶
This package provides containers to represent genomic experimental data as 2-dimensional matrices, follows Bioconductor’s SummarizedExperiment. In these matrices, the rows typically denote features or genomic regions of interest, while columns represent samples or cells.
The package currently includes representations for both SummarizedExperiment
and RangedSummarizedExperiment
. A distinction lies in the fact RangedSummarizedExperiment
object provides an additional slot to store genomic regions for each feature and is expected to be GenomicRanges
(more here).
Install¶
To get started, Install the package from PyPI,
pip install summarizedexperiment