biorat package

Submodules

biorat.ontology module

biorat.ontology.owl_to_dataframe(owl_location)[source]

Extract nodes and their lineages from ontologies as DataFrame.

Example

from biorat.ontology import (
    owl_to_dataframe,
)

result_df = owl_to_dataframe(
    "https://github.com/obophenotype/cell-ontology/releases/download/v2024-09-26/cl.owl"
)
print(result_df)
Parameters:

owl_location (str) –

Location or the URL of the OWL file.

Supports any argument acceepted by get_ontology().

Returns:

A Pandas DataFrame of the nodes, their labels and lineages.

Module contents