celldex

This package provides reference datasets with annotated cell types for convenient use by BiocPy packages and workflows in Python. These references were sourced and uploaded by the celldex R/Bioconductor package.

Each dataset is loaded as a SummarizedExperiment that is ready for further analysis, and may be used for downstream analysis, e.g in the SingleR Python implementation.

Contents

• Overview
  • Installation
  • Find reference datasets
  • Fetch reference datasets
  • Search for references
  • Adding new reference datasets
  • Note
• Module Reference
  • celldex package
• Contributions & Help
  • Issue Reports
  • Documentation Improvements
  • Code Contributions
  • Maintainer tasks
• License
• Authors
• Changelog
  • Version 0.1 (development)

Indices and tables

• Index

• Module Index

• Search Page