# celldex

This package provides reference datasets with annotated cell types for convenient use by [BiocPy](https://github.com/biocpy) packages and workflows in Python.
These references were sourced and uploaded by the [celldex R/Bioconductor](https://bioconductor.org/packages/devel/data/experiment/html/celldex.html) package.

Each dataset is loaded as a [`SummarizedExperiment`](https://bioconductor.org/packages/SummarizedExperiment) that is ready for further analysis, and may be used for downstream analysis, e.g in the [SingleR Python implementation](https://github.com/BiocPy/singler).

## Contents

```{toctree}
:maxdepth: 2

Overview <readme>
Module Reference <api/modules>
Contributions & Help <contributing>
License <license>
Authors <authors>
Changelog <changelog>
```

## Indices and tables

* {ref}`genindex`
* {ref}`modindex`
* {ref}`search`

[Sphinx]: http://www.sphinx-doc.org/
[Markdown]: https://daringfireball.net/projects/markdown/
[reStructuredText]: http://www.sphinx-doc.org/en/master/usage/restructuredtext/basics.html
[MyST]: https://myst-parser.readthedocs.io/en/latest/