experimenthub

ExperimentHub provides an interface to access and manage data from the Bioconductor ExperimentHub service directly in Python.

It is designed to work within the BiocPy ecosystem, converting R data objects (like SingleCellExperiment or SummarizedExperiment) into their Python equivalents (e.g., SummarizedExperiment) using rds2py.

[!NOTE]

This is an experimental package. It may not work with all RDS files from ExperimentHub. Currently, this package filters ExperimentHub resources to provide access to:

• File Formats: .rds

• R Classes: SingleCellExperiment, SummarizedExperiment, RangedSummarizedExperiment, GRanges etc

Files are converted to their respective BiocPy representations or common Python formats.

Install

To get started, install the package from PyPI

pip install experimenthub

Contents

• Overview
  • Install
  • Usage
  • Note
• Contributions & Help
  • Issue Reports
  • Documentation Improvements
  • Code Contributions
  • Maintainer tasks
• License
• Authors
• Changelog
  • Version 0.0.1
• Module Reference
  • experimenthub package

Indices and tables

• Index

• Module Index

• Search Page