rds2py

Parse, extract and create Python representations for datasets stored in RDS files. It supports Bioconductor’s SummarizedExperiment and SingleCellExperiment objects. This is possible because of Aaron’s rds2cpp library.

The package uses memory views (except for strings) so that we can access the same memory from C++ space in Python (through Cython of course). This is especially useful for large datasets so we don’t make copies of data.

Install

Package is published to PyPI

pip install rds2py

Contents

• Overview
  • Install
  • Usage
  • Developer Notes
  • Note
• Tutorial
  • Step 1: Read a RDS file in Python
  • Step 2: Python representations
• Contributions & Help
  • Issue Reports
  • Documentation Improvements
  • Code Contributions
  • Maintainer tasks
• License
• Authors
• Changelog
  • Version 0.3.0 (development)
  • Version 0.1
• Module Reference
  • rds2py package

Indices and tables

• Index

• Module Index

• Search Page