txdb¶
This package provides a Python interface to access and manipulate genome annotations, implemented in the Bioconductor GenomicFeatures package. It allows users to interact with TxDb SQLite databases to extract genomic features such as transcripts, exons, CDS, and promoters as GenomicRanges objects. It also includes a registry system to easily download and cache standard TxDb databases.
Install¶
To get started, install the package from PyPI
pip install txdb