Index

_

__copy__() (iranges.IRanges.IRanges method) __deepcopy__() (iranges.IRanges.IRanges method) __getitem__() (iranges.IRanges.IRanges method) __init__() (iranges.IRanges.IRanges method) (iranges.IRanges.IRangesIter method) (iranges.sew_handler.SEWWrangler method)

__iter__() (iranges.IRanges.IRanges method) (iranges.IRanges.IRangesIter method) __len__() (iranges.IRanges.IRanges method) __next__() (iranges.IRanges.IRangesIter method) __repr__() (iranges.IRanges.IRanges method) __setitem__() (iranges.IRanges.IRanges method)

C

calc_gap_and_overlap() (in module iranges.utils) clip_ranges() (in module iranges.utils) combine() (iranges.IRanges.IRanges method)

compute_up_down() (in module iranges.utils) count_overlaps() (iranges.IRanges.IRanges method) coverage() (in module iranges.lib_iranges) (iranges.IRanges.IRanges method)

D

disjoin() (iranges.IRanges.IRanges method) disjoint_bins() (in module iranges.lib_iranges) (iranges.IRanges.IRanges method)

distance() (iranges.IRanges.IRanges method)

E

empty() (iranges.IRanges.IRanges class method)

end (iranges.IRanges.IRanges property)

F

find_interval() (in module iranges.utils) find_overlaps() (iranges.IRanges.IRanges method) flank() (iranges.IRanges.IRanges method)

follow() (iranges.IRanges.IRanges method) from_pandas() (iranges.IRanges.IRanges class method) from_polars() (iranges.IRanges.IRanges class method)

G

gaps() (iranges.IRanges.IRanges method) gaps_ranges() (in module iranges.lib_iranges) get_end() (iranges.IRanges.IRanges method) get_mcols() (iranges.IRanges.IRanges method) get_metadata() (iranges.IRanges.IRanges method)

get_names() (iranges.IRanges.IRanges method) get_order() (in module iranges.lib_iranges) get_row() (iranges.IRanges.IRanges method) get_start() (iranges.IRanges.IRanges method) get_width() (iranges.IRanges.IRanges method)

H

handle_negative_coords() (in module iranges.utils)

I

intersect() (iranges.IRanges.IRanges method) intersect_ncls() (iranges.IRanges.IRanges method) iranges module IRanges (class in iranges.IRanges) iranges.IRanges module

iranges.lib_iranges module iranges.sew_handler module iranges.utils module IRangesIter (class in iranges.IRanges) is_disjoint() (iranges.IRanges.IRanges method)

M

mcols (iranges.IRanges.IRanges property) metadata (iranges.IRanges.IRanges property) module iranges iranges.IRanges iranges.lib_iranges iranges.sew_handler iranges.utils

N

names (iranges.IRanges.IRanges property) narrow() (iranges.IRanges.IRanges method)

nearest() (iranges.IRanges.IRanges method) normalize_array() (in module iranges.utils)

O

order() (iranges.IRanges.IRanges method)

overlap_indices() (iranges.IRanges.IRanges method)

P

precede() (iranges.IRanges.IRanges method)

promoters() (iranges.IRanges.IRanges method)

R

range() (iranges.IRanges.IRanges method) reduce() (iranges.IRanges.IRanges method) reduce_ranges() (in module iranges.lib_iranges)

reflect() (iranges.IRanges.IRanges method) resize() (iranges.IRanges.IRanges method) restrict() (iranges.IRanges.IRanges method)

S

set_mcols() (iranges.IRanges.IRanges method) set_metadata() (iranges.IRanges.IRanges method) set_names() (iranges.IRanges.IRanges method) set_start() (iranges.IRanges.IRanges method) set_width() (iranges.IRanges.IRanges method) setdiff() (iranges.IRanges.IRanges method) SEWWrangler (class in iranges.sew_handler)

shift() (iranges.IRanges.IRanges method) shift_and_clip_ranges() (in module iranges.lib_iranges) (iranges.IRanges.IRanges method) sliding_windows() (iranges.IRanges.IRanges method) solve() (iranges.sew_handler.SEWWrangler method) sort() (iranges.IRanges.IRanges method) start (iranges.IRanges.IRanges property) subset_by_overlaps() (iranges.IRanges.IRanges method)

T

terminators() (iranges.IRanges.IRanges method) threebands() (iranges.IRanges.IRanges method)

tile() (iranges.IRanges.IRanges method) to_pandas() (iranges.IRanges.IRanges method) to_polars() (iranges.IRanges.IRanges method)

U

union() (iranges.IRanges.IRanges method)

W

width (iranges.IRanges.IRanges property)