Index _ | A | B | C | D | E | F | G | I | M | N | O | P | R | S | T | W _ __copy__() (summarizedexperiment.BaseSE.BaseSE method) (summarizedexperiment.RangedSummarizedExperiment.RangedSummarizedExperiment method) __deepcopy__() (summarizedexperiment.BaseSE.BaseSE method) (summarizedexperiment.RangedSummarizedExperiment.RangedSummarizedExperiment method) __getitem__() (summarizedexperiment.BaseSE.BaseSE method) __init__() (summarizedexperiment.BaseSE.BaseSE method) (summarizedexperiment.RangedSummarizedExperiment.RangedSummarizedExperiment method) (summarizedexperiment.SummarizedExperiment.SummarizedExperiment method) __len__() (summarizedexperiment.BaseSE.BaseSE method) __repr__() (summarizedexperiment.BaseSE.BaseSE method) (summarizedexperiment.RangedSummarizedExperiment.RangedSummarizedExperiment method) A assay() (summarizedexperiment.BaseSE.BaseSE method) assay_names (summarizedexperiment.BaseSE.BaseSE property) assays (summarizedexperiment.BaseSE.BaseSE property) B BaseSE (class in summarizedexperiment.BaseSE) C col_data (summarizedexperiment.BaseSE.BaseSE property) col_names (summarizedexperiment.BaseSE.BaseSE property) coldata (summarizedexperiment.BaseSE.BaseSE property) colnames (summarizedexperiment.BaseSE.BaseSE property) column_data (summarizedexperiment.BaseSE.BaseSE property) column_names (summarizedexperiment.BaseSE.BaseSE property) columndata (summarizedexperiment.BaseSE.BaseSE property) columnnames (summarizedexperiment.BaseSE.BaseSE property) combine_columns() (in module summarizedexperiment.RangedSummarizedExperiment) (in module summarizedexperiment.SummarizedExperiment) combine_rows() (in module summarizedexperiment.RangedSummarizedExperiment) (in module summarizedexperiment.SummarizedExperiment) copy() (summarizedexperiment.BaseSE.BaseSE method) (summarizedexperiment.RangedSummarizedExperiment.RangedSummarizedExperiment method) coverage() (summarizedexperiment.RangedSummarizedExperiment.RangedSummarizedExperiment method) D dims (summarizedexperiment.BaseSE.BaseSE property) E end (summarizedexperiment.RangedSummarizedExperiment.RangedSummarizedExperiment property) F find_overlaps() (summarizedexperiment.RangedSummarizedExperiment.RangedSummarizedExperiment method) flank() (summarizedexperiment.RangedSummarizedExperiment.RangedSummarizedExperiment method) follow() (summarizedexperiment.RangedSummarizedExperiment.RangedSummarizedExperiment method) G get_assay_names() (summarizedexperiment.BaseSE.BaseSE method) get_assays() (summarizedexperiment.BaseSE.BaseSE method) get_column_data() (summarizedexperiment.BaseSE.BaseSE method) get_column_names() (summarizedexperiment.BaseSE.BaseSE method) get_metadata() (summarizedexperiment.BaseSE.BaseSE method) get_row_data() (summarizedexperiment.BaseSE.BaseSE method) get_row_names() (summarizedexperiment.BaseSE.BaseSE method) get_row_ranges() (summarizedexperiment.RangedSummarizedExperiment.RangedSummarizedExperiment method) get_slice() (summarizedexperiment.BaseSE.BaseSE method) (summarizedexperiment.RangedSummarizedExperiment.RangedSummarizedExperiment method) I is_matrix_like() (in module summarizedexperiment.type_checks) M metadata (summarizedexperiment.BaseSE.BaseSE property) module summarizedexperiment summarizedexperiment.BaseSE summarizedexperiment.RangedSummarizedExperiment summarizedexperiment.SummarizedExperiment summarizedexperiment.type_checks N narrow() (summarizedexperiment.RangedSummarizedExperiment.RangedSummarizedExperiment method) nearest() (summarizedexperiment.RangedSummarizedExperiment.RangedSummarizedExperiment method) O order() (summarizedexperiment.RangedSummarizedExperiment.RangedSummarizedExperiment method) P precede() (summarizedexperiment.RangedSummarizedExperiment.RangedSummarizedExperiment method) promoters() (summarizedexperiment.RangedSummarizedExperiment.RangedSummarizedExperiment method) R RangedSummarizedExperiment (class in summarizedexperiment.RangedSummarizedExperiment) relaxed_combine_columns() (in module summarizedexperiment.RangedSummarizedExperiment) (in module summarizedexperiment.SummarizedExperiment) relaxed_combine_rows() (in module summarizedexperiment.RangedSummarizedExperiment) (in module summarizedexperiment.SummarizedExperiment) resize() (summarizedexperiment.RangedSummarizedExperiment.RangedSummarizedExperiment method) restrict() (summarizedexperiment.RangedSummarizedExperiment.RangedSummarizedExperiment method) row_data (summarizedexperiment.BaseSE.BaseSE property) row_names (summarizedexperiment.BaseSE.BaseSE property) row_ranges (summarizedexperiment.RangedSummarizedExperiment.RangedSummarizedExperiment property) rowdata (summarizedexperiment.BaseSE.BaseSE property) rownames (summarizedexperiment.BaseSE.BaseSE property) S seq_info (summarizedexperiment.RangedSummarizedExperiment.RangedSummarizedExperiment property) seqnames (summarizedexperiment.RangedSummarizedExperiment.RangedSummarizedExperiment property) set_assay_names() (summarizedexperiment.BaseSE.BaseSE method) set_assays() (summarizedexperiment.BaseSE.BaseSE method) set_column_data() (summarizedexperiment.BaseSE.BaseSE method) set_column_names() (summarizedexperiment.BaseSE.BaseSE method) set_metadata() (summarizedexperiment.BaseSE.BaseSE method) set_row_data() (summarizedexperiment.BaseSE.BaseSE method) set_row_names() (summarizedexperiment.BaseSE.BaseSE method) set_row_ranges() (summarizedexperiment.RangedSummarizedExperiment.RangedSummarizedExperiment method) shape (summarizedexperiment.BaseSE.BaseSE property) shift() (summarizedexperiment.RangedSummarizedExperiment.RangedSummarizedExperiment method) SliceResult (in module summarizedexperiment.BaseSE) sort() (summarizedexperiment.RangedSummarizedExperiment.RangedSummarizedExperiment method) start (summarizedexperiment.RangedSummarizedExperiment.RangedSummarizedExperiment property) strand (summarizedexperiment.RangedSummarizedExperiment.RangedSummarizedExperiment property) subset_assays() (summarizedexperiment.BaseSE.BaseSE method) subset_by_overlaps() (summarizedexperiment.RangedSummarizedExperiment.RangedSummarizedExperiment method) summarizedexperiment module SummarizedExperiment (class in summarizedexperiment.SummarizedExperiment) summarizedexperiment.BaseSE module summarizedexperiment.RangedSummarizedExperiment module summarizedexperiment.SummarizedExperiment module summarizedexperiment.type_checks module T to_anndata() (summarizedexperiment.BaseSE.BaseSE method) W width (summarizedexperiment.RangedSummarizedExperiment.RangedSummarizedExperiment property)