Index

_

__annotations__ (pyexpressionatlas.exceptions.DownloadError attribute) (pyexpressionatlas.exceptions.ExpressionAtlasError attribute) (pyexpressionatlas.exceptions.InvalidAccessionError attribute) (pyexpressionatlas.models.SearchResult attribute) __dataclass_fields__ (pyexpressionatlas.models.SearchResult attribute) __dataclass_params__ (pyexpressionatlas.models.SearchResult attribute) __enter__() (pyexpressionatlas.api.BioStudiesAPI method) (pyexpressionatlas.client.ExpressionAtlasClient method) __eq__() (pyexpressionatlas.models.SearchResult method) __exit__() (pyexpressionatlas.api.BioStudiesAPI method) (pyexpressionatlas.client.ExpressionAtlasClient method) __format__() (pyexpressionatlas.models.ExperimentType method)

__hash__ (pyexpressionatlas.models.SearchResult attribute) __init__() (pyexpressionatlas.api.BioStudiesAPI method) (pyexpressionatlas.client.ExpressionAtlasClient method) (pyexpressionatlas.exceptions.APIError method) (pyexpressionatlas.exceptions.DownloadError method) (pyexpressionatlas.exceptions.InvalidAccessionError method) (pyexpressionatlas.models.SearchResult method) __match_args__ (pyexpressionatlas.models.SearchResult attribute) __new__() (pyexpressionatlas.models.ExperimentType method) __repr__() (pyexpressionatlas.client.ExpressionAtlasClient method) (pyexpressionatlas.models.ExperimentType method) (pyexpressionatlas.models.SearchResult method)

A

accession (pyexpressionatlas.models.SearchResult attribute) ANTIGEN_PROFILING (pyexpressionatlas.models.ExperimentType attribute)

api (pyexpressionatlas.client.ExpressionAtlasClient property) APIError

B

BioStudiesAPI (class in pyexpressionatlas.api)

C

close() (pyexpressionatlas.api.BioStudiesAPI method) (pyexpressionatlas.client.ExpressionAtlasClient method)

connection_error (pyexpressionatlas.models.SearchResult attribute)

D

download_experiment() (in module pyexpressionatlas.download)

download_experiments() (in module pyexpressionatlas.download) DownloadError

E

experiment_type (pyexpressionatlas.models.SearchResult attribute) ExperimentType (class in pyexpressionatlas.models)

ExpressionAtlasClient (class in pyexpressionatlas.client) ExpressionAtlasError

F

fetch_experiment_metadata() (pyexpressionatlas.api.BioStudiesAPI method) (pyexpressionatlas.client.ExpressionAtlasClient method)

filter_valid_accessions() (in module pyexpressionatlas.validation)

G

get_atlas_data() (in module pyexpressionatlas.download) get_atlas_experiment() (in module pyexpressionatlas.download)

get_eligible_types() (pyexpressionatlas.models.ExperimentType class method) get_experiment() (pyexpressionatlas.client.ExpressionAtlasClient method) get_experiments() (pyexpressionatlas.client.ExpressionAtlasClient method)

H

has_tsv_files() (in module pyexpressionatlas.download)

I

InvalidAccessionError is_microarray() (pyexpressionatlas.models.ExperimentType class method)

is_rnaseq() (pyexpressionatlas.models.ExperimentType class method) is_valid_accession() (in module pyexpressionatlas.validation)

M

MICRORNA_PROFILING_ARRAY (pyexpressionatlas.models.ExperimentType attribute) module pyexpressionatlas pyexpressionatlas.api pyexpressionatlas.client pyexpressionatlas.download pyexpressionatlas.exceptions pyexpressionatlas.models pyexpressionatlas.validation

P

PROTEOMIC_PROFILING (pyexpressionatlas.models.ExperimentType attribute) pyexpressionatlas module pyexpressionatlas.api module pyexpressionatlas.client module

pyexpressionatlas.download module pyexpressionatlas.exceptions module pyexpressionatlas.models module pyexpressionatlas.validation module

R

RNASEQ_CODING (pyexpressionatlas.models.ExperimentType attribute) RNASEQ_NONCODING (pyexpressionatlas.models.ExperimentType attribute)

RNASEQ_SINGLE_CELL_CODING (pyexpressionatlas.models.ExperimentType attribute) RNASEQ_SINGLE_CELL_NONCODING (pyexpressionatlas.models.ExperimentType attribute) RNASEQ_TOTAL (pyexpressionatlas.models.ExperimentType attribute)

S

search() (pyexpressionatlas.api.BioStudiesAPI method) search_experiments() (pyexpressionatlas.client.ExpressionAtlasClient method) search_results_to_biocframe() (in module pyexpressionatlas.models)

SearchResult (class in pyexpressionatlas.models) set_cache_dir() (in module pyexpressionatlas.download) species (pyexpressionatlas.models.SearchResult attribute)

T

title (pyexpressionatlas.models.SearchResult attribute)

to_dict() (pyexpressionatlas.models.SearchResult method) TRANSCRIPTION_PROFILING_ARRAY (pyexpressionatlas.models.ExperimentType attribute)

V

validate_accession() (in module pyexpressionatlas.validation)