scranpy

• scranpy package
  • Subpackages
    • scranpy.aggregation package
      • Submodules
      • scranpy.aggregation.aggregate_across_cells module
      • scranpy.aggregation.downsample_by_neighbors module
      • Module contents
    • scranpy.analyze package
      • Submodules
      • scranpy.analyze.AnalyzeOptions module
      • scranpy.analyze.AnalyzeResults module
      • scranpy.analyze.analyze module
      • scranpy.analyze.dry_analyze module
      • scranpy.analyze.live_analyze module
      • scranpy.analyze.run_neighbor_suite module
      • scranpy.analyze.update module
      • Module contents
    • scranpy.batch_correction package
      • Submodules
      • scranpy.batch_correction.mnn_correct module
      • Module contents
    • scranpy.clustering package
      • Submodules
      • scranpy.clustering.build_snn_graph module
      • Module contents
    • scranpy.dimensionality_reduction package
      • Submodules
      • scranpy.dimensionality_reduction.combine_embeddings module
      • scranpy.dimensionality_reduction.run_pca module
      • scranpy.dimensionality_reduction.run_tsne module
      • scranpy.dimensionality_reduction.run_umap module
      • Module contents
    • scranpy.feature_selection package
      • Submodules
      • scranpy.feature_selection.choose_hvgs module
      • scranpy.feature_selection.model_gene_variances module
      • Module contents
    • scranpy.feature_set_enrichment package
      • Submodules
      • scranpy.feature_set_enrichment.hypergeometric_test module
      • scranpy.feature_set_enrichment.score_feature_set module
      • Module contents
    • scranpy.marker_detection package
      • Submodules
      • scranpy.marker_detection.score_markers module
      • Module contents
    • scranpy.nearest_neighbors package
      • Submodules
      • scranpy.nearest_neighbors.build_neighbor_index module
      • scranpy.nearest_neighbors.find_nearest_neighbors module
      • Module contents
    • scranpy.normalization package
      • Submodules
      • scranpy.normalization.center_size_factors module
      • scranpy.normalization.grouped_size_factors module
      • scranpy.normalization.log_norm_counts module
      • Module contents
    • scranpy.quality_control package
      • Submodules
      • scranpy.quality_control.create_adt_qc_filter module
      • scranpy.quality_control.create_crispr_qc_filter module
      • scranpy.quality_control.create_rna_qc_filter module
      • scranpy.quality_control.filter_cells module
      • scranpy.quality_control.guess_mito_from_symbols module
      • scranpy.quality_control.per_cell_adt_qc_metrics module
      • scranpy.quality_control.per_cell_crispr_qc_metrics module
      • scranpy.quality_control.per_cell_rna_qc_metrics module
      • scranpy.quality_control.suggest_adt_qc_filters module
      • scranpy.quality_control.suggest_crispr_qc_filters module
      • scranpy.quality_control.suggest_rna_qc_filters module
      • Module contents
  • Module contents