scranpy package#
Subpackages#
- scranpy.aggregation package
- Submodules
- scranpy.aggregation.aggregate_across_cells module
AggregateAcrossCellsOptionsAggregateAcrossCellsOptions.compute_sumsAggregateAcrossCellsOptions.compute_detectedAggregateAcrossCellsOptions.assay_typeAggregateAcrossCellsOptions.num_threadsAggregateAcrossCellsOptions.__annotations__AggregateAcrossCellsOptions.__dataclass_fields__AggregateAcrossCellsOptions.__dataclass_params__AggregateAcrossCellsOptions.__eq__()AggregateAcrossCellsOptions.__hash__AggregateAcrossCellsOptions.__repr__()AggregateAcrossCellsOptions.assay_typeAggregateAcrossCellsOptions.compute_detectedAggregateAcrossCellsOptions.compute_sumsAggregateAcrossCellsOptions.num_threads
aggregate_across_cells()
- scranpy.aggregation.downsample_by_neighbors module
- Module contents
- scranpy.analyze package
- Submodules
- scranpy.analyze.AnalyzeOptions module
AnalyzeOptionsAnalyzeOptions.per_cell_rna_qc_metrics_optionsAnalyzeOptions.suggest_rna_qc_filters_optionsAnalyzeOptions.create_rna_qc_filter_optionsAnalyzeOptions.per_cell_adt_qc_metrics_optionsAnalyzeOptions.suggest_adt_qc_filters_optionsAnalyzeOptions.create_adt_qc_filter_optionsAnalyzeOptions.per_cell_crispr_qc_metrics_optionsAnalyzeOptions.suggest_crispr_qc_filters_optionsAnalyzeOptions.create_crispr_qc_filter_optionsAnalyzeOptions.filter_cells_optionsAnalyzeOptions.rna_log_norm_counts_optionsAnalyzeOptions.grouped_size_factors_optionsAnalyzeOptions.adt_log_norm_counts_optionsAnalyzeOptions.crispr_log_norm_counts_optionsAnalyzeOptions.choose_hvgs_optionsAnalyzeOptions.model_gene_variances_optionsAnalyzeOptions.rna_run_pca_optionsAnalyzeOptions.adt_run_pca_optionsAnalyzeOptions.crispr_run_pca_optionsAnalyzeOptions.mnn_correct_optionsAnalyzeOptions.build_neighbor_index_optionsAnalyzeOptions.find_nearest_neighbors_optionsAnalyzeOptions.run_tsne_optionsAnalyzeOptions.run_umap_optionsAnalyzeOptions.build_snn_graph_optionsAnalyzeOptions.rna_score_markers_optionsAnalyzeOptions.adt_score_markers_optionsAnalyzeOptions.crispr_score_markers_optionsAnalyzeOptions.miscellaneous_optionsAnalyzeOptions.__annotations__AnalyzeOptions.__dataclass_fields__AnalyzeOptions.__dataclass_params__AnalyzeOptions.__eq__()AnalyzeOptions.__hash__AnalyzeOptions.__repr__()AnalyzeOptions.adt_log_norm_counts_optionsAnalyzeOptions.adt_run_pca_optionsAnalyzeOptions.adt_score_markers_optionsAnalyzeOptions.build_neighbor_index_optionsAnalyzeOptions.build_snn_graph_optionsAnalyzeOptions.choose_hvgs_optionsAnalyzeOptions.combine_embeddings_optionsAnalyzeOptions.create_adt_qc_filter_optionsAnalyzeOptions.create_crispr_qc_filter_optionsAnalyzeOptions.create_rna_qc_filter_optionsAnalyzeOptions.crispr_log_norm_counts_optionsAnalyzeOptions.crispr_run_pca_optionsAnalyzeOptions.crispr_score_markers_optionsAnalyzeOptions.filter_cells_optionsAnalyzeOptions.find_nearest_neighbors_optionsAnalyzeOptions.grouped_size_factors_optionsAnalyzeOptions.miscellaneous_optionsAnalyzeOptions.mnn_correct_optionsAnalyzeOptions.model_gene_variances_optionsAnalyzeOptions.per_cell_adt_qc_metrics_optionsAnalyzeOptions.per_cell_crispr_qc_metrics_optionsAnalyzeOptions.per_cell_rna_qc_metrics_optionsAnalyzeOptions.rna_log_norm_counts_optionsAnalyzeOptions.rna_run_pca_optionsAnalyzeOptions.rna_score_markers_optionsAnalyzeOptions.run_tsne_optionsAnalyzeOptions.run_umap_optionsAnalyzeOptions.set_seed()AnalyzeOptions.set_threads()AnalyzeOptions.suggest_adt_qc_filters_optionsAnalyzeOptions.suggest_crispr_qc_filters_optionsAnalyzeOptions.suggest_rna_qc_filters_options
MiscellaneousOptionsMiscellaneousOptions.cell_namesMiscellaneousOptions.rna_feature_namesMiscellaneousOptions.adt_feature_namesMiscellaneousOptions.crispr_feature_namesMiscellaneousOptions.filter_on_rna_qcMiscellaneousOptions.filter_on_adt_qcMiscellaneousOptions.filter_on_crispr_qcMiscellaneousOptions.snn_graph_multilevel_resolutionMiscellaneousOptions.blockMiscellaneousOptions.__annotations__MiscellaneousOptions.__dataclass_fields__MiscellaneousOptions.__dataclass_params__MiscellaneousOptions.__eq__()MiscellaneousOptions.__hash__MiscellaneousOptions.__repr__()MiscellaneousOptions.adt_feature_namesMiscellaneousOptions.blockMiscellaneousOptions.cell_namesMiscellaneousOptions.crispr_feature_namesMiscellaneousOptions.filter_on_adt_qcMiscellaneousOptions.filter_on_crispr_qcMiscellaneousOptions.filter_on_rna_qcMiscellaneousOptions.rna_feature_namesMiscellaneousOptions.snn_graph_multilevel_resolution
- scranpy.analyze.AnalyzeResults module
AnalyzeResultsAnalyzeResults.rna_quality_control_metricsAnalyzeResults.rna_quality_control_thresholdsAnalyzeResults.rna_quality_control_filterAnalyzeResults.adt_quality_control_metricsAnalyzeResults.adt_quality_control_thresholdsAnalyzeResults.adt_quality_control_filterAnalyzeResults.crispr_quality_control_metricsAnalyzeResults.crispr_quality_control_thresholdsAnalyzeResults.crispr_quality_control_filterAnalyzeResults.quality_control_retainedAnalyzeResults.rna_size_factorsAnalyzeResults.adt_size_factorsAnalyzeResults.crispr_size_factorsAnalyzeResults.gene_variancesAnalyzeResults.hvgsAnalyzeResults.rna_pcaAnalyzeResults.adt_pcaAnalyzeResults.crispr_pcaAnalyzeResults.combined_pcsAnalyzeResults.mnnAnalyzeResults.tsneAnalyzeResults.umapAnalyzeResults.snn_graphAnalyzeResults.clustersAnalyzeResults.rna_markersAnalyzeResults.adt_markersAnalyzeResults.crispr_markersAnalyzeResults.__annotations__AnalyzeResults.__dataclass_fields__AnalyzeResults.__dataclass_params__AnalyzeResults.__eq__()AnalyzeResults.__hash__AnalyzeResults.__repr__()AnalyzeResults.adt_markersAnalyzeResults.adt_pcaAnalyzeResults.adt_quality_control_filterAnalyzeResults.adt_quality_control_metricsAnalyzeResults.adt_quality_control_thresholdsAnalyzeResults.adt_size_factorsAnalyzeResults.clustersAnalyzeResults.combined_pcsAnalyzeResults.crispr_markersAnalyzeResults.crispr_pcaAnalyzeResults.crispr_quality_control_filterAnalyzeResults.crispr_quality_control_metricsAnalyzeResults.crispr_quality_control_thresholdsAnalyzeResults.crispr_size_factorsAnalyzeResults.gene_variancesAnalyzeResults.hvgsAnalyzeResults.mnnAnalyzeResults.quality_control_retainedAnalyzeResults.rna_markersAnalyzeResults.rna_pcaAnalyzeResults.rna_quality_control_filterAnalyzeResults.rna_quality_control_metricsAnalyzeResults.rna_quality_control_thresholdsAnalyzeResults.rna_size_factorsAnalyzeResults.snn_graphAnalyzeResults.to_sce()AnalyzeResults.tsneAnalyzeResults.umap
- scranpy.analyze.analyze module
- scranpy.analyze.dry_analyze module
- scranpy.analyze.live_analyze module
- scranpy.analyze.run_neighbor_suite module
- scranpy.analyze.update module
- Module contents
- scranpy.batch_correction package
- Submodules
- scranpy.batch_correction.mnn_correct module
MnnCorrectOptionsMnnCorrectOptions.kMnnCorrectOptions.approximateMnnCorrectOptions.orderMnnCorrectOptions.reference_policyMnnCorrectOptions.num_madsMnnCorrectOptions.mass_capMnnCorrectOptions.num_threadsMnnCorrectOptions.__annotations__MnnCorrectOptions.__dataclass_fields__MnnCorrectOptions.__dataclass_params__MnnCorrectOptions.__eq__()MnnCorrectOptions.__hash__MnnCorrectOptions.__repr__()MnnCorrectOptions.approximateMnnCorrectOptions.kMnnCorrectOptions.mass_capMnnCorrectOptions.num_madsMnnCorrectOptions.num_threadsMnnCorrectOptions.orderMnnCorrectOptions.reference_policy
MnnCorrectResultMnnCorrectResult.correctedMnnCorrectResult.merge_orderMnnCorrectResult.num_pairsMnnCorrectResult.__annotations__MnnCorrectResult.__dataclass_fields__MnnCorrectResult.__dataclass_params__MnnCorrectResult.__eq__()MnnCorrectResult.__hash__MnnCorrectResult.__repr__()MnnCorrectResult.correctedMnnCorrectResult.merge_orderMnnCorrectResult.num_pairs
mnn_correct()
- Module contents
- scranpy.clustering package
- Submodules
- scranpy.clustering.build_snn_graph module
BuildSnnGraphOptionsBuildSnnGraphOptions.num_neighborsBuildSnnGraphOptions.weight_schemeBuildSnnGraphOptions.build_neighbor_index_optionsBuildSnnGraphOptions.num_threadsBuildSnnGraphOptions.__annotations__BuildSnnGraphOptions.__dataclass_fields__BuildSnnGraphOptions.__dataclass_params__BuildSnnGraphOptions.__eq__()BuildSnnGraphOptions.__hash__BuildSnnGraphOptions.__post_init__()BuildSnnGraphOptions.__repr__()BuildSnnGraphOptions.build_neighbor_index_optionsBuildSnnGraphOptions.num_neighborsBuildSnnGraphOptions.num_threadsBuildSnnGraphOptions.set_threads()BuildSnnGraphOptions.weight_scheme
build_snn_graph()
- Module contents
- scranpy.dimensionality_reduction package
- Submodules
- scranpy.dimensionality_reduction.combine_embeddings module
CombineEmbeddingsOptionsCombineEmbeddingsOptions.neighborsCombineEmbeddingsOptions.approximateCombineEmbeddingsOptions.weightsCombineEmbeddingsOptions.num_threadsCombineEmbeddingsOptions.__annotations__CombineEmbeddingsOptions.__dataclass_fields__CombineEmbeddingsOptions.__dataclass_params__CombineEmbeddingsOptions.__eq__()CombineEmbeddingsOptions.__hash__CombineEmbeddingsOptions.__repr__()CombineEmbeddingsOptions.approximateCombineEmbeddingsOptions.neighborsCombineEmbeddingsOptions.num_threadsCombineEmbeddingsOptions.weights
combine_embeddings()
- scranpy.dimensionality_reduction.run_pca module
PcaResultRunPcaOptionsRunPcaOptions.rankRunPcaOptions.subsetRunPcaOptions.blockRunPcaOptions.scaleRunPcaOptions.block_methodRunPcaOptions.block_weightsRunPcaOptions.num_threadsRunPcaOptions.assay_typeRunPcaOptions.__annotations__RunPcaOptions.__dataclass_fields__RunPcaOptions.__dataclass_params__RunPcaOptions.__eq__()RunPcaOptions.__hash__RunPcaOptions.__post_init__()RunPcaOptions.__repr__()RunPcaOptions.assay_typeRunPcaOptions.blockRunPcaOptions.block_methodRunPcaOptions.block_weightsRunPcaOptions.num_threadsRunPcaOptions.rankRunPcaOptions.scaleRunPcaOptions.subset
run_pca()
- scranpy.dimensionality_reduction.run_tsne module
InitializeTsneOptionsInitializeTsneOptions.perplexityInitializeTsneOptions.num_threadsInitializeTsneOptions.seedInitializeTsneOptions.__annotations__InitializeTsneOptions.__dataclass_fields__InitializeTsneOptions.__dataclass_params__InitializeTsneOptions.__eq__()InitializeTsneOptions.__hash__InitializeTsneOptions.__repr__()InitializeTsneOptions.num_threadsInitializeTsneOptions.perplexityInitializeTsneOptions.seedInitializeTsneOptions.set_threads()
RunTsneOptionsRunTsneOptions.max_iterationsRunTsneOptions.initialize_tsneRunTsneOptions.__annotations__RunTsneOptions.__dataclass_fields__RunTsneOptions.__dataclass_params__RunTsneOptions.__eq__()RunTsneOptions.__hash__RunTsneOptions.__repr__()RunTsneOptions.initialize_tsneRunTsneOptions.max_iterationsRunTsneOptions.set_threads()
TsneEmbeddingTsneStatusinitialize_tsne()run_tsne()tsne_perplexity_to_neighbors()
- scranpy.dimensionality_reduction.run_umap module
InitializeUmapOptionsInitializeUmapOptions.__annotations__InitializeUmapOptions.__dataclass_fields__InitializeUmapOptions.__dataclass_params__InitializeUmapOptions.__eq__()InitializeUmapOptions.__hash__InitializeUmapOptions.__repr__()InitializeUmapOptions.min_distInitializeUmapOptions.num_epochsInitializeUmapOptions.num_neighborsInitializeUmapOptions.num_threadsInitializeUmapOptions.seedInitializeUmapOptions.set_threads()
RunUmapOptionsUmapEmbeddingUmapStatusinitialize_umap()run_umap()
- Module contents
- scranpy.feature_selection package
- Submodules
- scranpy.feature_selection.choose_hvgs module
- scranpy.feature_selection.model_gene_variances module
ModelGeneVariancesOptionsModelGeneVariancesOptions.blockModelGeneVariancesOptions.spanModelGeneVariancesOptions.assay_typeModelGeneVariancesOptions.feature_namesModelGeneVariancesOptions.num_threadsModelGeneVariancesOptions.__annotations__ModelGeneVariancesOptions.__dataclass_fields__ModelGeneVariancesOptions.__dataclass_params__ModelGeneVariancesOptions.__eq__()ModelGeneVariancesOptions.__hash__ModelGeneVariancesOptions.__repr__()ModelGeneVariancesOptions.assay_typeModelGeneVariancesOptions.blockModelGeneVariancesOptions.feature_namesModelGeneVariancesOptions.num_threadsModelGeneVariancesOptions.span
model_gene_variances()
- Module contents
- scranpy.feature_set_enrichment package
- Submodules
- scranpy.feature_set_enrichment.hypergeometric_test module
HypergeometricTestOptionsHypergeometricTestOptions.logHypergeometricTestOptions.upper_tailHypergeometricTestOptions.num_threadsHypergeometricTestOptions.__annotations__HypergeometricTestOptions.__dataclass_fields__HypergeometricTestOptions.__dataclass_params__HypergeometricTestOptions.__eq__()HypergeometricTestOptions.__hash__HypergeometricTestOptions.__repr__()HypergeometricTestOptions.logHypergeometricTestOptions.num_threadsHypergeometricTestOptions.upper_tail
hypergeometric_test()
- scranpy.feature_set_enrichment.score_feature_set module
ScoreFeatureSetOptionsScoreFeatureSetOptions.blockScoreFeatureSetOptions.scaleScoreFeatureSetOptions.assay_typeScoreFeatureSetOptions.num_threadsScoreFeatureSetOptions.__annotations__ScoreFeatureSetOptions.__dataclass_fields__ScoreFeatureSetOptions.__dataclass_params__ScoreFeatureSetOptions.__eq__()ScoreFeatureSetOptions.__hash__ScoreFeatureSetOptions.__repr__()ScoreFeatureSetOptions.assay_typeScoreFeatureSetOptions.blockScoreFeatureSetOptions.num_threadsScoreFeatureSetOptions.scale
score_feature_set()
- Module contents
- scranpy.marker_detection package
- Submodules
- scranpy.marker_detection.score_markers module
ScoreMarkersOptionsScoreMarkersOptions.blockScoreMarkersOptions.thresholdScoreMarkersOptions.compute_aucScoreMarkersOptions.assay_typeScoreMarkersOptions.feature_namesScoreMarkersOptions.num_threadsScoreMarkersOptions.__annotations__ScoreMarkersOptions.__dataclass_fields__ScoreMarkersOptions.__dataclass_params__ScoreMarkersOptions.__eq__()ScoreMarkersOptions.__hash__ScoreMarkersOptions.__repr__()ScoreMarkersOptions.assay_typeScoreMarkersOptions.blockScoreMarkersOptions.compute_aucScoreMarkersOptions.feature_namesScoreMarkersOptions.num_threadsScoreMarkersOptions.threshold
score_markers()
- Module contents
- scranpy.nearest_neighbors package
- Submodules
- scranpy.nearest_neighbors.build_neighbor_index module
BuildNeighborIndexOptionsBuildNeighborIndexOptions.approximateBuildNeighborIndexOptions.__annotations__BuildNeighborIndexOptions.__dataclass_fields__BuildNeighborIndexOptions.__dataclass_params__BuildNeighborIndexOptions.__eq__()BuildNeighborIndexOptions.__hash__BuildNeighborIndexOptions.__repr__()BuildNeighborIndexOptions.approximate
NeighborIndexbuild_neighbor_index()
- scranpy.nearest_neighbors.find_nearest_neighbors module
FindNearestNeighborsOptionsFindNearestNeighborsOptions.num_threadsFindNearestNeighborsOptions.__annotations__FindNearestNeighborsOptions.__dataclass_fields__FindNearestNeighborsOptions.__dataclass_params__FindNearestNeighborsOptions.__eq__()FindNearestNeighborsOptions.__hash__FindNearestNeighborsOptions.__repr__()FindNearestNeighborsOptions.num_threads
NeighborResultsSerializedNeighborResultsSingleNeighborResultsfind_nearest_neighbors()
- Module contents
- scranpy.normalization package
- Submodules
- scranpy.normalization.center_size_factors module
CenterSizeFactorsOptionsCenterSizeFactorsOptions.blockCenterSizeFactorsOptions.in_placeCenterSizeFactorsOptions.allow_zerosCenterSizeFactorsOptions.allow_non_finiteCenterSizeFactorsOptions.__annotations__CenterSizeFactorsOptions.__dataclass_fields__CenterSizeFactorsOptions.__dataclass_params__CenterSizeFactorsOptions.__eq__()CenterSizeFactorsOptions.__hash__CenterSizeFactorsOptions.__repr__()CenterSizeFactorsOptions.allow_non_finiteCenterSizeFactorsOptions.allow_zerosCenterSizeFactorsOptions.blockCenterSizeFactorsOptions.in_place
center_size_factors()
- scranpy.normalization.grouped_size_factors module
GroupedSizeFactorsOptionsGroupedSizeFactorsOptions.groupsGroupedSizeFactorsOptions.rankGroupedSizeFactorsOptions.blockGroupedSizeFactorsOptions.initial_factorsGroupedSizeFactorsOptions.assay_typeGroupedSizeFactorsOptions.num_threadsGroupedSizeFactorsOptions.__annotations__GroupedSizeFactorsOptions.__dataclass_fields__GroupedSizeFactorsOptions.__dataclass_params__GroupedSizeFactorsOptions.__eq__()GroupedSizeFactorsOptions.__hash__GroupedSizeFactorsOptions.__repr__()GroupedSizeFactorsOptions.assay_typeGroupedSizeFactorsOptions.blockGroupedSizeFactorsOptions.groupsGroupedSizeFactorsOptions.initial_factorsGroupedSizeFactorsOptions.num_threadsGroupedSizeFactorsOptions.rank
grouped_size_factors()
- scranpy.normalization.log_norm_counts module
LogNormCountsOptionsLogNormCountsOptions.size_factorsLogNormCountsOptions.delayedLogNormCountsOptions.centerLogNormCountsOptions.center_size_factors_optionsLogNormCountsOptions.with_size_factorsLogNormCountsOptions.assay_typeLogNormCountsOptions.num_threadsLogNormCountsOptions.__annotations__LogNormCountsOptions.__dataclass_fields__LogNormCountsOptions.__dataclass_params__LogNormCountsOptions.__eq__()LogNormCountsOptions.__hash__LogNormCountsOptions.__repr__()LogNormCountsOptions.assay_typeLogNormCountsOptions.blockLogNormCountsOptions.centerLogNormCountsOptions.center_size_factors_optionsLogNormCountsOptions.delayedLogNormCountsOptions.num_threadsLogNormCountsOptions.size_factorsLogNormCountsOptions.with_size_factors
log_norm_counts()
- Module contents
- scranpy.quality_control package
- Submodules
- scranpy.quality_control.create_adt_qc_filter module
- scranpy.quality_control.create_crispr_qc_filter module
CreateCrisprQcFilterOptionsCreateCrisprQcFilterOptions.blockCreateCrisprQcFilterOptions.__annotations__CreateCrisprQcFilterOptions.__dataclass_fields__CreateCrisprQcFilterOptions.__dataclass_params__CreateCrisprQcFilterOptions.__eq__()CreateCrisprQcFilterOptions.__hash__CreateCrisprQcFilterOptions.__repr__()CreateCrisprQcFilterOptions.block
create_crispr_qc_filter()
- scranpy.quality_control.create_rna_qc_filter module
- scranpy.quality_control.filter_cells module
FilterCellsOptionsFilterCellsOptions.discardFilterCellsOptions.intersectFilterCellsOptions.with_retain_vectorFilterCellsOptions.delayedFilterCellsOptions.__annotations__FilterCellsOptions.__dataclass_fields__FilterCellsOptions.__dataclass_params__FilterCellsOptions.__eq__()FilterCellsOptions.__hash__FilterCellsOptions.__repr__()FilterCellsOptions.delayedFilterCellsOptions.discardFilterCellsOptions.intersectFilterCellsOptions.with_retain_vector
filter_cells()
- scranpy.quality_control.guess_mito_from_symbols module
- scranpy.quality_control.per_cell_adt_qc_metrics module
PerCellAdtQcMetricsOptionsPerCellAdtQcMetricsOptions.subsetsPerCellAdtQcMetricsOptions.assay_typePerCellAdtQcMetricsOptions.cell_namesPerCellAdtQcMetricsOptions.num_threadsPerCellAdtQcMetricsOptions.__annotations__PerCellAdtQcMetricsOptions.__dataclass_fields__PerCellAdtQcMetricsOptions.__dataclass_params__PerCellAdtQcMetricsOptions.__eq__()PerCellAdtQcMetricsOptions.__hash__PerCellAdtQcMetricsOptions.__repr__()PerCellAdtQcMetricsOptions.assay_typePerCellAdtQcMetricsOptions.cell_namesPerCellAdtQcMetricsOptions.num_threadsPerCellAdtQcMetricsOptions.subsets
per_cell_adt_qc_metrics()
- scranpy.quality_control.per_cell_crispr_qc_metrics module
PerCellCrisprQcMetricsOptionsPerCellCrisprQcMetricsOptions.assay_typePerCellCrisprQcMetricsOptions.cell_namesPerCellCrisprQcMetricsOptions.num_threadsPerCellCrisprQcMetricsOptions.__annotations__PerCellCrisprQcMetricsOptions.__dataclass_fields__PerCellCrisprQcMetricsOptions.__dataclass_params__PerCellCrisprQcMetricsOptions.__eq__()PerCellCrisprQcMetricsOptions.__hash__PerCellCrisprQcMetricsOptions.__repr__()PerCellCrisprQcMetricsOptions.assay_typePerCellCrisprQcMetricsOptions.cell_namesPerCellCrisprQcMetricsOptions.num_threads
per_cell_crispr_qc_metrics()
- scranpy.quality_control.per_cell_rna_qc_metrics module
PerCellRnaQcMetricsOptionsPerCellRnaQcMetricsOptions.subsetsPerCellRnaQcMetricsOptions.assay_typePerCellRnaQcMetricsOptions.cell_namesPerCellRnaQcMetricsOptions.num_threadsPerCellRnaQcMetricsOptions.__annotations__PerCellRnaQcMetricsOptions.__dataclass_fields__PerCellRnaQcMetricsOptions.__dataclass_params__PerCellRnaQcMetricsOptions.__eq__()PerCellRnaQcMetricsOptions.__hash__PerCellRnaQcMetricsOptions.__repr__()PerCellRnaQcMetricsOptions.assay_typePerCellRnaQcMetricsOptions.cell_namesPerCellRnaQcMetricsOptions.num_threadsPerCellRnaQcMetricsOptions.subsets
per_cell_rna_qc_metrics()
- scranpy.quality_control.suggest_adt_qc_filters module
SuggestAdtQcFiltersOptionsSuggestAdtQcFiltersOptions.blockSuggestAdtQcFiltersOptions.num_madsSuggestAdtQcFiltersOptions.custom_thresholdsSuggestAdtQcFiltersOptions.__annotations__SuggestAdtQcFiltersOptions.__dataclass_fields__SuggestAdtQcFiltersOptions.__dataclass_params__SuggestAdtQcFiltersOptions.__eq__()SuggestAdtQcFiltersOptions.__hash__SuggestAdtQcFiltersOptions.__repr__()SuggestAdtQcFiltersOptions.blockSuggestAdtQcFiltersOptions.custom_thresholdsSuggestAdtQcFiltersOptions.num_mads
suggest_adt_qc_filters()
- scranpy.quality_control.suggest_crispr_qc_filters module
SuggestCrisprQcFiltersOptionsSuggestCrisprQcFiltersOptions.blockSuggestCrisprQcFiltersOptions.num_madsSuggestCrisprQcFiltersOptions.custom_thresholdsSuggestCrisprQcFiltersOptions.__annotations__SuggestCrisprQcFiltersOptions.__dataclass_fields__SuggestCrisprQcFiltersOptions.__dataclass_params__SuggestCrisprQcFiltersOptions.__eq__()SuggestCrisprQcFiltersOptions.__hash__SuggestCrisprQcFiltersOptions.__repr__()SuggestCrisprQcFiltersOptions.blockSuggestCrisprQcFiltersOptions.custom_thresholdsSuggestCrisprQcFiltersOptions.num_mads
suggest_crispr_qc_filters()
- scranpy.quality_control.suggest_rna_qc_filters module
SuggestRnaQcFiltersOptionsSuggestRnaQcFiltersOptions.blockSuggestRnaQcFiltersOptions.num_madsSuggestRnaQcFiltersOptions.custom_thresholdsSuggestRnaQcFiltersOptions.__annotations__SuggestRnaQcFiltersOptions.__dataclass_fields__SuggestRnaQcFiltersOptions.__dataclass_params__SuggestRnaQcFiltersOptions.__eq__()SuggestRnaQcFiltersOptions.__hash__SuggestRnaQcFiltersOptions.__repr__()SuggestRnaQcFiltersOptions.blockSuggestRnaQcFiltersOptions.custom_thresholdsSuggestRnaQcFiltersOptions.num_mads
suggest_rna_qc_filters()
- Module contents