genomicranges

• genomicranges package
  • Subpackages
    • genomicranges.io package
      • Submodules
      • genomicranges.io.gtf module
      • genomicranges.io.ucsc module
      • Module contents
  • Submodules
  • genomicranges.GenomicRanges module
    • GenomicRanges
      • GenomicRanges.__copy__()
      • GenomicRanges.__deepcopy__()
      • GenomicRanges.__getitem__()
      • GenomicRanges.__init__()
      • GenomicRanges.__iter__()
      • GenomicRanges.__len__()
      • GenomicRanges.__repr__()
      • GenomicRanges.__setitem__()
      • GenomicRanges.binned_average()
      • GenomicRanges.copy()
      • GenomicRanges.count_overlaps()
      • GenomicRanges.coverage()
      • GenomicRanges.disjoin()
      • GenomicRanges.disjoint_bins()
      • GenomicRanges.distance()
      • GenomicRanges.empty()
      • GenomicRanges.end
      • GenomicRanges.extract_groups_by_seqnames()
      • GenomicRanges.find_overlaps()
      • GenomicRanges.flank()
      • GenomicRanges.follow()
      • GenomicRanges.from_pandas()
      • GenomicRanges.from_polars()
      • GenomicRanges.gaps()
      • GenomicRanges.get_end()
      • GenomicRanges.get_mcols()
      • GenomicRanges.get_metadata()
      • GenomicRanges.get_names()
      • GenomicRanges.get_out_of_bound_index()
      • GenomicRanges.get_ranges()
      • GenomicRanges.get_seqinfo()
      • GenomicRanges.get_seqlengths()
      • GenomicRanges.get_seqnames()
      • GenomicRanges.get_start()
      • GenomicRanges.get_strand()
      • GenomicRanges.get_subset()
      • GenomicRanges.get_width()
      • GenomicRanges.intersect()
      • GenomicRanges.intersect_ncls()
      • GenomicRanges.invert_strand()
      • GenomicRanges.is_disjoint()
      • GenomicRanges.match()
      • GenomicRanges.mcols
      • GenomicRanges.metadata
      • GenomicRanges.names
      • GenomicRanges.narrow()
      • GenomicRanges.nearest()
      • GenomicRanges.order()
      • GenomicRanges.precede()
      • GenomicRanges.promoters()
      • GenomicRanges.range()
      • GenomicRanges.ranges
      • GenomicRanges.rank()
      • GenomicRanges.reduce()
      • GenomicRanges.resize()
      • GenomicRanges.restrict()
      • GenomicRanges.sample()
      • GenomicRanges.seqinfo
      • GenomicRanges.seqnames
      • GenomicRanges.set_mcols()
      • GenomicRanges.set_metadata()
      • GenomicRanges.set_names()
      • GenomicRanges.set_ranges()
      • GenomicRanges.set_seqinfo()
      • GenomicRanges.set_seqnames()
      • GenomicRanges.set_strand()
      • GenomicRanges.set_subset()
      • GenomicRanges.setdiff()
      • GenomicRanges.shift()
      • GenomicRanges.sliding_windows()
      • GenomicRanges.sort()
      • GenomicRanges.split()
      • GenomicRanges.start
      • GenomicRanges.strand
      • GenomicRanges.subset_by_overlaps()
      • GenomicRanges.subtract()
      • GenomicRanges.terminators()
      • GenomicRanges.tile()
      • GenomicRanges.tile_genome()
      • GenomicRanges.to_pandas()
      • GenomicRanges.to_polars()
      • GenomicRanges.trim()
      • GenomicRanges.union()
      • GenomicRanges.width
    • GenomicRangesIter
      • GenomicRangesIter.__init__()
      • GenomicRangesIter.__iter__()
      • GenomicRangesIter.__next__()
  • genomicranges.GenomicRangesList module
    • GenomicRangesList
      • GenomicRangesList.__copy__()
      • GenomicRangesList.__deepcopy__()
      • GenomicRangesList.__getitem__()
      • GenomicRangesList.__init__()
      • GenomicRangesList.__iter__()
      • GenomicRangesList.__len__()
      • GenomicRangesList.__repr__()
      • GenomicRangesList.as_genomic_ranges()
      • GenomicRangesList.as_granges()
      • GenomicRangesList.copy()
      • GenomicRangesList.element_nrows()
      • GenomicRangesList.empty()
      • GenomicRangesList.end
      • GenomicRangesList.from_dict()
      • GenomicRangesList.generic_accessor()
      • GenomicRangesList.get_mcols()
      • GenomicRangesList.get_metadata()
      • GenomicRangesList.get_names()
      • GenomicRangesList.get_range_lengths()
      • GenomicRangesList.get_ranges()
      • GenomicRangesList.groups()
      • GenomicRangesList.is_circular
      • GenomicRangesList.is_empty()
      • GenomicRangesList.mcols
      • GenomicRangesList.metadata
      • GenomicRangesList.names
      • GenomicRangesList.range()
      • GenomicRangesList.range_lengths
      • GenomicRangesList.ranges
      • GenomicRangesList.seq_info
      • GenomicRangesList.seqnames
      • GenomicRangesList.set_mcols()
      • GenomicRangesList.set_metadata()
      • GenomicRangesList.set_names()
      • GenomicRangesList.set_ranges()
      • GenomicRangesList.start
      • GenomicRangesList.strand
      • GenomicRangesList.to_pandas()
      • GenomicRangesList.width
    • GenomicRangesListIter
      • GenomicRangesListIter.__init__()
      • GenomicRangesListIter.__iter__()
      • GenomicRangesListIter.__next__()
  • genomicranges.SeqInfo module
    • SeqInfo
      • SeqInfo.__copy__()
      • SeqInfo.__deepcopy__()
      • SeqInfo.__getitem__()
      • SeqInfo.__init__()
      • SeqInfo.__iter__()
      • SeqInfo.__len__()
      • SeqInfo.__repr__()
      • SeqInfo.copy()
      • SeqInfo.empty()
      • SeqInfo.genome
      • SeqInfo.get_genome()
      • SeqInfo.get_is_circular()
      • SeqInfo.get_seqlengths()
      • SeqInfo.get_seqnames()
      • SeqInfo.get_subset()
      • SeqInfo.is_circular
      • SeqInfo.seqlengths
      • SeqInfo.seqnames
      • SeqInfo.set_genome()
      • SeqInfo.set_is_circular()
      • SeqInfo.set_seqlengths()
      • SeqInfo.set_seqnames()
    • SeqInfoIterator
      • SeqInfoIterator.__init__()
      • SeqInfoIterator.__iter__()
      • SeqInfoIterator.__next__()
    • merge_SeqInfo()
  • genomicranges.utils module
    • compute_up_down()
    • extract_groups_from_granges()
    • group_by_indices()
    • sanitize_strand_vector()
    • slide_intervals()
    • split_intervals()
    • wrapper_follow_precede()
  • Module contents