GenomicRanges¶
Python equivalent to Bioconductor’s GenomicRanges to represent genomic locations and support genomic analysis. It uses efficient structures already available in the Pandas/NumPy eco-system.
Install¶
Package is deployed to PyPI
pip install genomicranges
Contents¶
- Overview
GenomicRanges
: Genomic analysis- Construct a
GenomicRanges
object - Sequence information
- Subset operations
- Intra-range transformations
- Inter-range methods
- Set operations
- Compute over bins
- Generate tiles or bins
- Coverage
- Overlap based methods
- Search operations
- Comparison, rank and order operations
- Combine
GenomicRanges
objects by rows - Misc operations
GenomicRangesList
class- Module Reference
- Contributions & Help
- License
- Authors
- Changelog