Index _ | A | B | C | D | E | F | G | I | M | O | R | S | T | V | W _ __annotations__ (cellarr.build_options.CellMetadataOptions attribute) (cellarr.build_options.GeneAnnotationOptions attribute) (cellarr.build_options.MatrixOptions attribute) (cellarr.build_options.SampleMetadataOptions attribute) (cellarr.CellArrDatasetSlice.CellArrDatasetSlice attribute) __dataclass_fields__ (cellarr.build_options.CellMetadataOptions attribute) (cellarr.build_options.GeneAnnotationOptions attribute) (cellarr.build_options.MatrixOptions attribute) (cellarr.build_options.SampleMetadataOptions attribute) (cellarr.CellArrDatasetSlice.CellArrDatasetSlice attribute) __dataclass_params__ (cellarr.build_options.CellMetadataOptions attribute) (cellarr.build_options.GeneAnnotationOptions attribute) (cellarr.build_options.MatrixOptions attribute) (cellarr.build_options.SampleMetadataOptions attribute) (cellarr.CellArrDatasetSlice.CellArrDatasetSlice attribute) __del__() (cellarr.CellArrDataset.CellArrDataset method) (cellarr.dataloader.DataModule method) __eq__() (cellarr.build_options.CellMetadataOptions method) (cellarr.build_options.GeneAnnotationOptions method) (cellarr.build_options.MatrixOptions method) (cellarr.build_options.SampleMetadataOptions method) (cellarr.CellArrDatasetSlice.CellArrDatasetSlice method) __getitem__() (cellarr.CellArrDataset.CellArrDataset method) (cellarr.dataloader.scDataset method) __hash__ (cellarr.build_options.CellMetadataOptions attribute) (cellarr.build_options.GeneAnnotationOptions attribute) (cellarr.build_options.MatrixOptions attribute) (cellarr.build_options.SampleMetadataOptions attribute) (cellarr.CellArrDatasetSlice.CellArrDatasetSlice attribute) __init__() (cellarr.build_options.CellMetadataOptions method) (cellarr.build_options.GeneAnnotationOptions method) (cellarr.build_options.MatrixOptions method) (cellarr.build_options.SampleMetadataOptions method) (cellarr.CellArrDataset.CellArrDataset method) (cellarr.CellArrDatasetSlice.CellArrDatasetSlice method) (cellarr.dataloader.DataModule method) (cellarr.dataloader.scDataset method) __len__() (cellarr.CellArrDataset.CellArrDataset method) (cellarr.CellArrDatasetSlice.CellArrDatasetSlice method) (cellarr.dataloader.scDataset method) __parameters__ (cellarr.dataloader.scDataset attribute) __repr__() (cellarr.build_options.CellMetadataOptions method) (cellarr.build_options.GeneAnnotationOptions method) (cellarr.build_options.MatrixOptions method) (cellarr.build_options.SampleMetadataOptions method) (cellarr.CellArrDataset.CellArrDataset method) (cellarr.CellArrDatasetSlice.CellArrDatasetSlice method) (cellarr.dataloader.DataModule method) (cellarr.dataloader.scDataset method) A append_to_tiledb_frame() (in module cellarr.buildutils_tiledb_frame) B build_cellarrdataset() (in module cellarr.build_cellarrdataset) C cell_metadata (cellarr.CellArrDatasetSlice.CellArrDatasetSlice attribute) cellarr module cellarr.build_cellarrdataset module cellarr.build_options module cellarr.buildutils_tiledb_array module cellarr.buildutils_tiledb_frame module cellarr.CellArrDataset module cellarr.CellArrDatasetSlice module cellarr.dataloader module cellarr.queryutils_tiledb_frame module cellarr.utils_anndata module CellArrDataset (class in cellarr.CellArrDataset) CellArrDatasetSlice (class in cellarr.CellArrDatasetSlice) CellMetadataOptions (class in cellarr.build_options) collate() (cellarr.dataloader.DataModule method) column_types (cellarr.build_options.CellMetadataOptions attribute), [1] (cellarr.build_options.GeneAnnotationOptions attribute), [1] (cellarr.build_options.SampleMetadataOptions attribute), [1] consolidate_duplicate_gene_func (cellarr.build_options.MatrixOptions attribute) consolidate_duplicate_gene_func() (cellarr.build_options.MatrixOptions method) consolidate_duplicate_symbols() (in module cellarr.utils_anndata) create_tiledb_array() (in module cellarr.buildutils_tiledb_array) create_tiledb_frame_from_chunk() (in module cellarr.buildutils_tiledb_frame) create_tiledb_frame_from_column_names() (in module cellarr.buildutils_tiledb_frame) create_tiledb_frame_from_dataframe() (in module cellarr.buildutils_tiledb_frame) D DataModule (class in cellarr.dataloader) dtype (cellarr.build_options.CellMetadataOptions attribute), [1] (cellarr.build_options.GeneAnnotationOptions attribute), [1] (cellarr.build_options.MatrixOptions attribute), [1] (cellarr.build_options.SampleMetadataOptions attribute), [1] E extract_anndata_info() (in module cellarr.utils_anndata) F feature_column (cellarr.build_options.GeneAnnotationOptions attribute), [1] G gene_annotation (cellarr.CellArrDatasetSlice.CellArrDatasetSlice attribute) GeneAnnotationOptions (class in cellarr.build_options) generate_metadata_tiledb_csv() (in module cellarr.build_cellarrdataset) generate_metadata_tiledb_frame() (in module cellarr.build_cellarrdataset) get_a_column() (in module cellarr.queryutils_tiledb_frame) get_cell_metadata_column() (cellarr.CellArrDataset.CellArrDataset method) get_cell_metadata_columns() (cellarr.CellArrDataset.CellArrDataset method) get_cell_subset() (cellarr.CellArrDataset.CellArrDataset method) get_gene_annotation_column() (cellarr.CellArrDataset.CellArrDataset method) get_gene_annotation_columns() (cellarr.CellArrDataset.CellArrDataset method) get_gene_annotation_index() (cellarr.CellArrDataset.CellArrDataset method) get_gene_subset() (cellarr.CellArrDataset.CellArrDataset method) get_index() (in module cellarr.queryutils_tiledb_frame) get_matrix_subset() (cellarr.CellArrDataset.CellArrDataset method) get_sample_metadata_column() (cellarr.CellArrDataset.CellArrDataset method) get_sample_metadata_columns() (cellarr.CellArrDataset.CellArrDataset method) get_sample_subset() (cellarr.CellArrDataset.CellArrDataset method) get_sampler_weights() (cellarr.dataloader.DataModule method) get_schema_names_frame() (in module cellarr.queryutils_tiledb_frame) get_slice() (cellarr.CellArrDataset.CellArrDataset method) I infer_column_types() (in module cellarr.buildutils_tiledb_frame) M matrix (cellarr.CellArrDatasetSlice.CellArrDatasetSlice attribute) matrix_attr_name (cellarr.build_options.MatrixOptions attribute), [1] matrix_name (cellarr.build_options.MatrixOptions attribute), [1] MatrixOptions (class in cellarr.build_options) module cellarr cellarr.build_cellarrdataset cellarr.build_options cellarr.buildutils_tiledb_array cellarr.buildutils_tiledb_frame cellarr.CellArrDataset cellarr.CellArrDatasetSlice cellarr.dataloader cellarr.queryutils_tiledb_frame cellarr.utils_anndata O optimize_tiledb_array() (in module cellarr.buildutils_tiledb_array) R remap_anndata() (in module cellarr.utils_anndata) S SampleMetadataOptions (class in cellarr.build_options) scan_for_cellcounts() (in module cellarr.utils_anndata) scan_for_features() (in module cellarr.utils_anndata) scDataset (class in cellarr.dataloader) shape (cellarr.CellArrDataset.CellArrDataset property) (cellarr.CellArrDatasetSlice.CellArrDatasetSlice property) skip (cellarr.build_options.CellMetadataOptions attribute), [1] (cellarr.build_options.GeneAnnotationOptions attribute), [1] (cellarr.build_options.MatrixOptions attribute), [1] (cellarr.build_options.SampleMetadataOptions attribute), [1] subset_array() (in module cellarr.queryutils_tiledb_frame) subset_frame() (in module cellarr.queryutils_tiledb_frame) T tiledb_store_name (cellarr.build_options.CellMetadataOptions attribute), [1] (cellarr.build_options.GeneAnnotationOptions attribute), [1] (cellarr.build_options.MatrixOptions attribute), [1] (cellarr.build_options.SampleMetadataOptions attribute), [1] to_anndata() (cellarr.CellArrDatasetSlice.CellArrDatasetSlice method) to_summarizedexperiment() (cellarr.CellArrDatasetSlice.CellArrDatasetSlice method) train_dataloader() (cellarr.dataloader.DataModule method) V val_dataloader() (cellarr.dataloader.DataModule method) W write_csr_matrix_to_tiledb() (in module cellarr.buildutils_tiledb_array)