Python Module Index


	s
	`scranpy`
	`scranpy.aggregation`
	`scranpy.aggregation.aggregate_across_cells`
	`scranpy.aggregation.downsample_by_neighbors`
	`scranpy.analyze`
	`scranpy.analyze.analyze`
	`scranpy.analyze.AnalyzeOptions`
	`scranpy.analyze.AnalyzeResults`
	`scranpy.analyze.dry_analyze`
	`scranpy.analyze.live_analyze`
	`scranpy.analyze.run_neighbor_suite`
	`scranpy.analyze.update`
	`scranpy.batch_correction`
	`scranpy.batch_correction.mnn_correct`
	`scranpy.clustering`
	`scranpy.clustering.build_snn_graph`
	`scranpy.dimensionality_reduction`
	`scranpy.dimensionality_reduction.combine_embeddings`
	`scranpy.dimensionality_reduction.run_pca`
	`scranpy.dimensionality_reduction.run_tsne`
	`scranpy.dimensionality_reduction.run_umap`
	`scranpy.feature_selection`
	`scranpy.feature_selection.choose_hvgs`
	`scranpy.feature_selection.model_gene_variances`
	`scranpy.feature_set_enrichment`
	`scranpy.feature_set_enrichment.hypergeometric_test`
	`scranpy.feature_set_enrichment.score_feature_set`
	`scranpy.marker_detection`
	`scranpy.marker_detection.score_markers`
	`scranpy.nearest_neighbors`
	`scranpy.nearest_neighbors.build_neighbor_index`
	`scranpy.nearest_neighbors.find_nearest_neighbors`
	`scranpy.normalization`
	`scranpy.normalization.center_size_factors`
	`scranpy.normalization.grouped_size_factors`
	`scranpy.normalization.log_norm_counts`
	`scranpy.quality_control`
	`scranpy.quality_control.create_adt_qc_filter`
	`scranpy.quality_control.create_crispr_qc_filter`
	`scranpy.quality_control.create_rna_qc_filter`
	`scranpy.quality_control.filter_cells`
	`scranpy.quality_control.guess_mito_from_symbols`
	`scranpy.quality_control.per_cell_adt_qc_metrics`
	`scranpy.quality_control.per_cell_crispr_qc_metrics`
	`scranpy.quality_control.per_cell_rna_qc_metrics`
	`scranpy.quality_control.suggest_adt_qc_filters`
	`scranpy.quality_control.suggest_crispr_qc_filters`
	`scranpy.quality_control.suggest_rna_qc_filters`