import sys
print(sys.version_info)sys.version_info(major=3, minor=11, micro=9, releaselevel='final', serial=0)Session Info
The code base for this repository is available at https://github.com/BiocPy/BiocWorkshop2024.
Python
The Python version on the GitHub runner:
Packages
Versions of packages installed during the build process:
import math
import genomicranges
import summarizedexperiment
import singlecellexperiment
import multiassayexperiment
import rds2py
import celldex
import scrnaseq
import session_info
session_info.show()Click to view session information
----- celldex 0.1.1 genomicranges 0.4.28 multiassayexperiment 0.4.2 rds2py 0.4.4 scrnaseq 0.2.0 session_info 1.0.0 singlecellexperiment 0.4.6 summarizedexperiment 0.4.5 -----
Click to view modules imported as dependencies
PIL 10.4.0 anndata 0.10.8 anyio NA arrow 1.3.0 asciitree NA asttokens NA attr 23.2.0 attrs 23.2.0 babel 2.15.0 biocframe 0.5.11 biocutils 0.1.5 certifi 2024.07.04 cffi 1.16.0 charset_normalizer 3.3.2 comm 0.2.2 cycler 0.12.1 cython_runtime NA dateutil 2.9.0.post0 debugpy 1.8.2 decorator 5.1.1 defusedxml 0.7.1 delayedarray 0.5.1 dolomite_base 0.2.4 executing 2.0.1 fastjsonschema NA filelock 3.15.4 fqdn NA gypsum_client 0.1.3 h5py 3.11.0 idna 3.7 ipykernel 6.29.5 iranges 0.2.11 isoduration NA jedi 0.19.1 jinja2 3.1.4 json5 0.9.25 jsonpointer 3.0.0 jsonschema 4.23.0 jsonschema_specifications NA jupyter_events 0.10.0 jupyter_server 2.14.2 jupyterlab_server 2.27.3 kiwisolver 1.4.5 markupsafe 2.1.5 matplotlib 3.9.1 matplotlib_inline 0.1.7 mpl_toolkits NA natsort 8.4.0 nbformat 5.10.4 numcodecs 0.13.0 numpy 1.26.4 overrides NA packaging 24.1 pandas 2.2.2 parso 0.8.4 platformdirs 4.2.2 prometheus_client NA prompt_toolkit 3.0.47 psutil 6.0.0 pure_eval 0.2.3 pyarrow 17.0.0 pydev_ipython NA pydevconsole NA pydevd 2.9.5 pydevd_file_utils NA pydevd_plugins NA pydevd_tracing NA pygments 2.18.0 pyparsing 3.1.2 pythonjsonlogger NA pytz 2024.1 referencing NA requests 2.32.3 rfc3339_validator 0.1.4 rfc3986_validator 0.1.1 rpds NA scipy 1.12.0 send2trash NA six 1.16.0 sniffio 1.3.1 stack_data 0.6.3 torch 2.3.1+cu121 torchgen NA tornado 6.4.1 tqdm 4.66.4 traitlets 5.14.3 typing_extensions NA uri_template NA urllib3 2.2.2 wcwidth 0.2.13 webcolors 24.6.0 websocket 1.8.0 yaml 6.0.1 zarr 2.18.2 zmq 26.0.3
----- IPython 8.26.0 jupyter_client 8.6.2 jupyter_core 5.7.2 jupyterlab 4.2.4 notebook 7.2.1 ----- Python 3.11.9 (main, Jun 25 2024, 18:25:01) [GCC 11.4.0] Linux-6.5.0-1023-azure-x86_64-with-glibc2.35 ----- Session information updated at 2024-07-24 03:52