Index _ | A | B | C | D | E | F | G | I | M | N | O | P | R | S | T | U | W _ __annotations__ (genomicranges.GenomicRanges.GenomicRanges attribute) (genomicranges.grangeslist.CompressedGenomicRangesList attribute) (genomicranges.grangeslist.CompressedGRangesList attribute) __copy__() (genomicranges.GenomicRanges.GenomicRanges method) (genomicranges.sequence_info.SeqInfo method) __deepcopy__() (genomicranges.GenomicRanges.GenomicRanges method) (genomicranges.sequence_info.SeqInfo method) __getitem__() (genomicranges.GenomicRanges.GenomicRanges method) (genomicranges.sequence_info.SeqInfo method) __init__() (genomicranges.GenomicRanges.GenomicRanges method) (genomicranges.GenomicRanges.GenomicRangesIter method) (genomicranges.grangeslist.CompressedGenomicRangesList method) (genomicranges.sequence_info.SeqInfo method) (genomicranges.sequence_info.SeqInfoIterator method) __iter__() (genomicranges.GenomicRanges.GenomicRanges method) (genomicranges.GenomicRanges.GenomicRangesIter method) (genomicranges.sequence_info.SeqInfo method) (genomicranges.sequence_info.SeqInfoIterator method) __len__() (genomicranges.GenomicRanges.GenomicRanges method) (genomicranges.sequence_info.SeqInfo method) __next__() (genomicranges.GenomicRanges.GenomicRangesIter method) (genomicranges.sequence_info.SeqInfoIterator method) __repr__() (genomicranges.GenomicRanges.GenomicRanges method) (genomicranges.grangeslist.CompressedGenomicRangesList method) (genomicranges.sequence_info.SeqInfo method) __setitem__() (genomicranges.GenomicRanges.GenomicRanges method) A access_gtf_ucsc() (in module genomicranges.io.ucsc) B binned_average() (genomicranges.GenomicRanges.GenomicRanges method) C CompressedGenomicRangesList (class in genomicranges.grangeslist) CompressedGRangesList (class in genomicranges.grangeslist) compute_up_down() (in module genomicranges.utils) copy() (genomicranges.GenomicRanges.GenomicRanges method) (genomicranges.sequence_info.SeqInfo method) count_overlaps() (genomicranges.GenomicRanges.GenomicRanges method) coverage() (genomicranges.GenomicRanges.GenomicRanges method) D disjoin() (genomicranges.GenomicRanges.GenomicRanges method) disjoint_bins() (genomicranges.GenomicRanges.GenomicRanges method) distance() (genomicranges.GenomicRanges.GenomicRanges method) E empty() (genomicranges.GenomicRanges.GenomicRanges class method) (genomicranges.grangeslist.CompressedGenomicRangesList class method) (genomicranges.sequence_info.SeqInfo class method) end (genomicranges.GenomicRanges.GenomicRanges property) (genomicranges.grangeslist.CompressedGenomicRangesList property) extract_groups_by_seqnames() (genomicranges.GenomicRanges.GenomicRanges method) extract_groups_from_granges() (in module genomicranges.utils) extract_range() (genomicranges.grangeslist.CompressedGenomicRangesList method) F find_overlaps() (genomicranges.GenomicRanges.GenomicRanges method) flank() (genomicranges.GenomicRanges.GenomicRanges method) follow() (genomicranges.GenomicRanges.GenomicRanges method) from_list() (genomicranges.grangeslist.CompressedGenomicRangesList class method) from_pandas() (genomicranges.GenomicRanges.GenomicRanges class method) from_polars() (genomicranges.GenomicRanges.GenomicRanges class method) G gaps() (genomicranges.GenomicRanges.GenomicRanges method) genome (genomicranges.sequence_info.SeqInfo property) genomicranges module GenomicRanges (class in genomicranges.GenomicRanges) genomicranges.GenomicRanges module genomicranges.grangeslist module genomicranges.io module genomicranges.io.gtf module genomicranges.io.ucsc module genomicranges.sequence_info module genomicranges.utils module GenomicRangesIter (class in genomicranges.GenomicRanges) get_end() (genomicranges.GenomicRanges.GenomicRanges method) get_genome() (genomicranges.sequence_info.SeqInfo method) get_is_circular() (genomicranges.sequence_info.SeqInfo method) get_mcols() (genomicranges.GenomicRanges.GenomicRanges method) get_names() (genomicranges.GenomicRanges.GenomicRanges method) get_out_of_bound_index() (genomicranges.GenomicRanges.GenomicRanges method) get_ranges() (genomicranges.GenomicRanges.GenomicRanges method) get_seqinfo() (genomicranges.GenomicRanges.GenomicRanges method) get_seqlengths() (genomicranges.GenomicRanges.GenomicRanges method) (genomicranges.sequence_info.SeqInfo method) get_seqnames() (genomicranges.GenomicRanges.GenomicRanges method) (genomicranges.sequence_info.SeqInfo method) get_start() (genomicranges.GenomicRanges.GenomicRanges method) get_strand() (genomicranges.GenomicRanges.GenomicRanges method) get_subset() (genomicranges.GenomicRanges.GenomicRanges method) (genomicranges.sequence_info.SeqInfo method) get_width() (genomicranges.GenomicRanges.GenomicRanges method) GRanges (class in genomicranges.GenomicRanges) group_by_indices() (in module genomicranges.utils) I intersect() (genomicranges.GenomicRanges.GenomicRanges method) intersect_ncls() (genomicranges.GenomicRanges.GenomicRanges method) invert_strand() (genomicranges.GenomicRanges.GenomicRanges method) is_circular (genomicranges.sequence_info.SeqInfo property) is_disjoint() (genomicranges.GenomicRanges.GenomicRanges method) M match() (genomicranges.GenomicRanges.GenomicRanges method) mcols (genomicranges.GenomicRanges.GenomicRanges property) merge_SeqInfo() (in module genomicranges.sequence_info) module genomicranges genomicranges.GenomicRanges genomicranges.grangeslist genomicranges.io genomicranges.io.gtf genomicranges.io.ucsc genomicranges.sequence_info genomicranges.utils N names (genomicranges.GenomicRanges.GenomicRanges property) narrow() (genomicranges.GenomicRanges.GenomicRanges method) nearest() (genomicranges.GenomicRanges.GenomicRanges method) O order() (genomicranges.GenomicRanges.GenomicRanges method) P parse_gtf() (in module genomicranges.io.gtf) pintersect() (genomicranges.GenomicRanges.GenomicRanges method) precede() (genomicranges.GenomicRanges.GenomicRanges method) promoters() (genomicranges.GenomicRanges.GenomicRanges method) R range() (genomicranges.GenomicRanges.GenomicRanges method) ranges (genomicranges.GenomicRanges.GenomicRanges property) (genomicranges.grangeslist.CompressedGenomicRangesList property) rank() (genomicranges.GenomicRanges.GenomicRanges method) read_gtf() (in module genomicranges.io.gtf) read_ucsc() (in module genomicranges.io.ucsc) reduce() (genomicranges.GenomicRanges.GenomicRanges method) resize() (genomicranges.GenomicRanges.GenomicRanges method) restrict() (genomicranges.GenomicRanges.GenomicRanges method) S sample() (genomicranges.GenomicRanges.GenomicRanges method) sanitize_strand_vector() (in module genomicranges.utils) SeqInfo (class in genomicranges.sequence_info) seqinfo (genomicranges.GenomicRanges.GenomicRanges property) (genomicranges.grangeslist.CompressedGenomicRangesList property) SeqInfoIterator (class in genomicranges.sequence_info) seqlengths (genomicranges.sequence_info.SeqInfo property) seqnames (genomicranges.GenomicRanges.GenomicRanges property) (genomicranges.grangeslist.CompressedGenomicRangesList property) (genomicranges.sequence_info.SeqInfo property) set_genome() (genomicranges.sequence_info.SeqInfo method) set_is_circular() (genomicranges.sequence_info.SeqInfo method) set_mcols() (genomicranges.GenomicRanges.GenomicRanges method) set_names() (genomicranges.GenomicRanges.GenomicRanges method) set_ranges() (genomicranges.GenomicRanges.GenomicRanges method) set_seqinfo() (genomicranges.GenomicRanges.GenomicRanges method) set_seqlengths() (genomicranges.sequence_info.SeqInfo method) set_seqnames() (genomicranges.GenomicRanges.GenomicRanges method) (genomicranges.sequence_info.SeqInfo method) set_strand() (genomicranges.GenomicRanges.GenomicRanges method) set_subset() (genomicranges.GenomicRanges.GenomicRanges method) setdiff() (genomicranges.GenomicRanges.GenomicRanges method) shift() (genomicranges.GenomicRanges.GenomicRanges method) slide_intervals() (in module genomicranges.utils) sliding_windows() (genomicranges.GenomicRanges.GenomicRanges method) sort() (genomicranges.GenomicRanges.GenomicRanges method) split() (genomicranges.GenomicRanges.GenomicRanges method) split_intervals() (in module genomicranges.utils) stack() (genomicranges.grangeslist.CompressedGenomicRangesList method) start (genomicranges.GenomicRanges.GenomicRanges property) (genomicranges.grangeslist.CompressedGenomicRangesList property) strand (genomicranges.GenomicRanges.GenomicRanges property) (genomicranges.grangeslist.CompressedGenomicRangesList property) subset_by_overlaps() (genomicranges.GenomicRanges.GenomicRanges method) subtract() (genomicranges.GenomicRanges.GenomicRanges method) T terminators() (genomicranges.GenomicRanges.GenomicRanges method) tile() (genomicranges.GenomicRanges.GenomicRanges method) tile_genome() (genomicranges.GenomicRanges.GenomicRanges class method) to_pandas() (genomicranges.GenomicRanges.GenomicRanges method) to_polars() (genomicranges.GenomicRanges.GenomicRanges method) trim() (genomicranges.GenomicRanges.GenomicRanges method) U union() (genomicranges.GenomicRanges.GenomicRanges method) W width (genomicranges.GenomicRanges.GenomicRanges property) (genomicranges.grangeslist.CompressedGenomicRangesList property) wrapper_follow_precede() (in module genomicranges.utils)