Index _ | A | B | C | D | E | F | G | I | M | N | O | P | R | S | T | U | W _ __copy__() (genomicranges.GenomicRanges.GenomicRanges method) (genomicranges.GenomicRangesList.GenomicRangesList method) (genomicranges.SeqInfo.SeqInfo method) __deepcopy__() (genomicranges.GenomicRanges.GenomicRanges method) (genomicranges.GenomicRangesList.GenomicRangesList method) (genomicranges.SeqInfo.SeqInfo method) __getitem__() (genomicranges.GenomicRanges.GenomicRanges method) (genomicranges.GenomicRangesList.GenomicRangesList method) (genomicranges.SeqInfo.SeqInfo method) __init__() (genomicranges.GenomicRanges.GenomicRanges method) (genomicranges.GenomicRanges.GenomicRangesIter method) (genomicranges.GenomicRangesList.GenomicRangesList method) (genomicranges.GenomicRangesList.GenomicRangesListIter method) (genomicranges.SeqInfo.SeqInfo method) (genomicranges.SeqInfo.SeqInfoIterator method) __iter__() (genomicranges.GenomicRanges.GenomicRanges method) (genomicranges.GenomicRanges.GenomicRangesIter method) (genomicranges.GenomicRangesList.GenomicRangesList method) (genomicranges.GenomicRangesList.GenomicRangesListIter method) (genomicranges.SeqInfo.SeqInfo method) (genomicranges.SeqInfo.SeqInfoIterator method) __len__() (genomicranges.GenomicRanges.GenomicRanges method) (genomicranges.GenomicRangesList.GenomicRangesList method) (genomicranges.SeqInfo.SeqInfo method) __next__() (genomicranges.GenomicRanges.GenomicRangesIter method) (genomicranges.GenomicRangesList.GenomicRangesListIter method) (genomicranges.SeqInfo.SeqInfoIterator method) __repr__() (genomicranges.GenomicRanges.GenomicRanges method) (genomicranges.GenomicRangesList.GenomicRangesList method) (genomicranges.SeqInfo.SeqInfo method) __setitem__() (genomicranges.GenomicRanges.GenomicRanges method) A access_gtf_ucsc() (in module genomicranges.io.ucsc) as_genomic_ranges() (genomicranges.GenomicRangesList.GenomicRangesList method) as_granges() (genomicranges.GenomicRangesList.GenomicRangesList method) B binned_average() (genomicranges.GenomicRanges.GenomicRanges method) C copy() (genomicranges.GenomicRanges.GenomicRanges method) (genomicranges.GenomicRangesList.GenomicRangesList method) (genomicranges.SeqInfo.SeqInfo method) count_overlaps() (genomicranges.GenomicRanges.GenomicRanges method) coverage() (genomicranges.GenomicRanges.GenomicRanges method) create_np_vector() (in module genomicranges.utils) D disjoin() (genomicranges.GenomicRanges.GenomicRanges method) distance() (genomicranges.GenomicRanges.GenomicRanges method) E element_nrows() (genomicranges.GenomicRangesList.GenomicRangesList method) empty() (genomicranges.GenomicRanges.GenomicRanges class method) (genomicranges.GenomicRangesList.GenomicRangesList class method) (genomicranges.SeqInfo.SeqInfo class method) end (genomicranges.GenomicRanges.GenomicRanges property) (genomicranges.GenomicRangesList.GenomicRangesList property) F find_overlaps() (genomicranges.GenomicRanges.GenomicRanges method) flank() (genomicranges.GenomicRanges.GenomicRanges method) follow() (genomicranges.GenomicRanges.GenomicRanges method) from_dict() (genomicranges.GenomicRangesList.GenomicRangesList class method) from_pandas() (genomicranges.GenomicRanges.GenomicRanges class method) from_polars() (genomicranges.GenomicRanges.GenomicRanges class method) G gaps() (genomicranges.GenomicRanges.GenomicRanges method) generic_accessor() (genomicranges.GenomicRangesList.GenomicRangesList method) genome (genomicranges.SeqInfo.SeqInfo property) genomicranges module GenomicRanges (class in genomicranges.GenomicRanges) genomicranges.GenomicRanges module genomicranges.GenomicRangesList module genomicranges.io module genomicranges.io.gtf module genomicranges.io.ucsc module genomicranges.SeqInfo module genomicranges.utils module GenomicRangesIter (class in genomicranges.GenomicRanges) GenomicRangesList (class in genomicranges.GenomicRangesList) GenomicRangesListIter (class in genomicranges.GenomicRangesList) get_end() (genomicranges.GenomicRanges.GenomicRanges method) get_genome() (genomicranges.SeqInfo.SeqInfo method) get_is_circular() (genomicranges.SeqInfo.SeqInfo method) get_mcols() (genomicranges.GenomicRanges.GenomicRanges method) (genomicranges.GenomicRangesList.GenomicRangesList method) get_metadata() (genomicranges.GenomicRanges.GenomicRanges method) (genomicranges.GenomicRangesList.GenomicRangesList method) get_names() (genomicranges.GenomicRanges.GenomicRanges method) (genomicranges.GenomicRangesList.GenomicRangesList method) get_range_lengths() (genomicranges.GenomicRangesList.GenomicRangesList method) get_ranges() (genomicranges.GenomicRanges.GenomicRanges method) (genomicranges.GenomicRangesList.GenomicRangesList method) get_seqinfo() (genomicranges.GenomicRanges.GenomicRanges method) get_seqlengths() (genomicranges.SeqInfo.SeqInfo method) get_seqnames() (genomicranges.GenomicRanges.GenomicRanges method) (genomicranges.SeqInfo.SeqInfo method) get_start() (genomicranges.GenomicRanges.GenomicRanges method) get_strand() (genomicranges.GenomicRanges.GenomicRanges method) get_subset() (genomicranges.GenomicRanges.GenomicRanges method) (genomicranges.SeqInfo.SeqInfo method) get_width() (genomicranges.GenomicRanges.GenomicRanges method) group_by_indices() (in module genomicranges.utils) groups() (genomicranges.GenomicRangesList.GenomicRangesList method) I intersect() (genomicranges.GenomicRanges.GenomicRanges method) intersect_ncls() (genomicranges.GenomicRanges.GenomicRanges method) invert_strand() (genomicranges.GenomicRanges.GenomicRanges method) is_circular (genomicranges.GenomicRangesList.GenomicRangesList property) (genomicranges.SeqInfo.SeqInfo property) is_empty() (genomicranges.GenomicRangesList.GenomicRangesList method) M match() (genomicranges.GenomicRanges.GenomicRanges method) mcols (genomicranges.GenomicRanges.GenomicRanges property) (genomicranges.GenomicRangesList.GenomicRangesList property) merge_SeqInfo() (in module genomicranges.SeqInfo) metadata (genomicranges.GenomicRanges.GenomicRanges property) (genomicranges.GenomicRangesList.GenomicRangesList property) module genomicranges genomicranges.GenomicRanges genomicranges.GenomicRangesList genomicranges.io genomicranges.io.gtf genomicranges.io.ucsc genomicranges.SeqInfo genomicranges.utils N names (genomicranges.GenomicRanges.GenomicRanges property) (genomicranges.GenomicRangesList.GenomicRangesList property) narrow() (genomicranges.GenomicRanges.GenomicRanges method) nearest() (genomicranges.GenomicRanges.GenomicRanges method) O order() (genomicranges.GenomicRanges.GenomicRanges method) P parse_gtf() (in module genomicranges.io.gtf) precede() (genomicranges.GenomicRanges.GenomicRanges method) promoters() (genomicranges.GenomicRanges.GenomicRanges method) R range() (genomicranges.GenomicRanges.GenomicRanges method) (genomicranges.GenomicRangesList.GenomicRangesList method) range_lengths (genomicranges.GenomicRangesList.GenomicRangesList property) ranges (genomicranges.GenomicRanges.GenomicRanges property) (genomicranges.GenomicRangesList.GenomicRangesList property) rank() (genomicranges.GenomicRanges.GenomicRanges method) read_gtf() (in module genomicranges.io.gtf) read_ucsc() (in module genomicranges.io.ucsc) reduce() (genomicranges.GenomicRanges.GenomicRanges method) resize() (genomicranges.GenomicRanges.GenomicRanges method) restrict() (genomicranges.GenomicRanges.GenomicRanges method) S sample() (genomicranges.GenomicRanges.GenomicRanges method) sanitize_strand_vector() (in module genomicranges.utils) seq_info (genomicranges.GenomicRangesList.GenomicRangesList property) SeqInfo (class in genomicranges.SeqInfo) seqinfo (genomicranges.GenomicRanges.GenomicRanges property) SeqInfoIterator (class in genomicranges.SeqInfo) seqlengths (genomicranges.SeqInfo.SeqInfo property) seqnames (genomicranges.GenomicRanges.GenomicRanges property) (genomicranges.GenomicRangesList.GenomicRangesList property) (genomicranges.SeqInfo.SeqInfo property) set_genome() (genomicranges.SeqInfo.SeqInfo method) set_is_circular() (genomicranges.SeqInfo.SeqInfo method) set_mcols() (genomicranges.GenomicRanges.GenomicRanges method) (genomicranges.GenomicRangesList.GenomicRangesList method) set_metadata() (genomicranges.GenomicRanges.GenomicRanges method) (genomicranges.GenomicRangesList.GenomicRangesList method) set_names() (genomicranges.GenomicRanges.GenomicRanges method) (genomicranges.GenomicRangesList.GenomicRangesList method) set_ranges() (genomicranges.GenomicRanges.GenomicRanges method) (genomicranges.GenomicRangesList.GenomicRangesList method) set_seqinfo() (genomicranges.GenomicRanges.GenomicRanges method) set_seqlengths() (genomicranges.SeqInfo.SeqInfo method) set_seqnames() (genomicranges.GenomicRanges.GenomicRanges method) (genomicranges.SeqInfo.SeqInfo method) set_strand() (genomicranges.GenomicRanges.GenomicRanges method) set_subset() (genomicranges.GenomicRanges.GenomicRanges method) setdiff() (genomicranges.GenomicRanges.GenomicRanges method) shift() (genomicranges.GenomicRanges.GenomicRanges method) slide_intervals() (in module genomicranges.utils) sliding_windows() (genomicranges.GenomicRanges.GenomicRanges method) sort() (genomicranges.GenomicRanges.GenomicRanges method) split() (genomicranges.GenomicRanges.GenomicRanges method) split_intervals() (in module genomicranges.utils) start (genomicranges.GenomicRanges.GenomicRanges property) (genomicranges.GenomicRangesList.GenomicRangesList property) strand (genomicranges.GenomicRanges.GenomicRanges property) (genomicranges.GenomicRangesList.GenomicRangesList property) subset_by_overlaps() (genomicranges.GenomicRanges.GenomicRanges method) subtract() (genomicranges.GenomicRanges.GenomicRanges method) T tile() (genomicranges.GenomicRanges.GenomicRanges method) tile_by_range() (genomicranges.GenomicRanges.GenomicRanges method) tile_genome() (genomicranges.GenomicRanges.GenomicRanges class method) to_pandas() (genomicranges.GenomicRanges.GenomicRanges method) (genomicranges.GenomicRangesList.GenomicRangesList method) to_polars() (genomicranges.GenomicRanges.GenomicRanges method) trim() (genomicranges.GenomicRanges.GenomicRanges method) U union() (genomicranges.GenomicRanges.GenomicRanges method) W width (genomicranges.GenomicRanges.GenomicRanges property) (genomicranges.GenomicRangesList.GenomicRangesList property)