Represent experimental data

BiocPy provides (currently) three classes to represented experimental data. This includes

• SummarizedExperiment (GitHub, Docs, BioC): Container class to represent genomic experiments, following Bioconductor’s SummarizedExperiment.
• SingleCellExperiment (GitHub, Docs, BioC): Container class to represent single-cell experiments; follows Bioconductor’s SingleCellExperiment.
• MultiAssayExperiment (GitHub, Docs, BioC): Container class to represent multiple experiments and assays performed over a set of samples. follows Bioconductor’s MAE R/Bioc Package.

Install packages

The biocpy package serves as a convenient wrapper that installs all the core packages within the ecosystem.

pip install biocpy

Alternatively, you can install specific packages as required. For example:

pip install summarizedexperiment # <package-name>

Update packages

To update packages, use the following command:

pip install -U summarizedexperiment # or <package-name>