The basics

BiocPy implements essential foundational data structures that serve as the building blocks for extensive and complex representations. This includes the BiocFrame package providing a Bioconductor-like data frame class, and the GenomicRanges package to aid in representing genomic regions and facilitating analysis. The BiocUtils package provides many atomic data type classes, defines generics and efficiently manages most common operations across these packages.

Install packages

The biocpy package serves as a convenient wrapper that installs all the core packages within the ecosystem.

pip install biocpy

Alternatively, you can install specific packages as required. For example:

pip install biocframe # <package-name>

Update packages

To update packages, use the following command:

pip install -U biocframe # or <package-name>